RNA id: TU86503


Basic Information

Item Value
RNA id TU86503
length 261
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G64086
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 15072539 ~ 15072799 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatcaataaacatgtgaatttaataccatttaataccatatattttaattcacttgataggaccttatttattaaaacgttttttttttttttatcgcaatGCCGCGCGCGCTTTCCTTTTGACTGACcctaaactgtttgatccagttattatattttattatattaataccattttaaagtttttcgtttctatgttttgaaattcgttagattatatttttgtccacattttgggtttattttcgtttgttatttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86499 lncRNA upstream 15148 15057131 ~ 15057391 (+) True G64083
TU86480 lncRNA upstream 36703 15005012 ~ 15035836 (+) True G64067
TU86470 lncRNA upstream 80531 14991203 ~ 14992008 (+) True G64057
TU86419 lncRNA upstream 114271 14953831 ~ 14958268 (+) False G64047
TU86430 lncRNA upstream 116174 14953831 ~ 14956365 (+) False G64047
TU86509 lncRNA downstream 18172 15090971 ~ 15091193 (+) True G64088
TU86512 lncRNA downstream 50212 15123011 ~ 15123221 (+) True G64091
TU86506 lncRNA downstream 74227 15147026 ~ 15189969 (+) True G64087
TU86507 lncRNA downstream 74227 15147026 ~ 15153261 (+) False G64087
TU86571 lncRNA downstream 553777 15626576 ~ 15629978 (+) True G64141
XM_022671175.1 mRNA upstream 71957 14997118 ~ 15000582 (+) True fam200b
XM_022671389.1 mRNA upstream 345184 14721032 ~ 14727355 (+) True LOC111192957
XM_022671390.1 mRNA upstream 345184 14722914 ~ 14727355 (+) False LOC111192957
XM_007234987.3 mRNA upstream 830305 14226439 ~ 14242234 (+) True gata3
XM_007234988.3 mRNA upstream 832117 14226436 ~ 14240422 (+) False gata3
XM_007245020.3 mRNA downstream 349202 15422001 ~ 15426787 (+) True LOC103045633
XM_022671152.1 mRNA downstream 491218 15564017 ~ 15571205 (+) True LOC111192874
XM_022671394.1 mRNA downstream 831543 15904342 ~ 15923062 (+) True ccdc87
XM_007245047.3 mRNA downstream 831543 15904342 ~ 15923062 (+) False ccdc87
XM_022671395.1 mRNA downstream 831543 15904342 ~ 15923062 (+) False ccdc87
TU86374 other upstream 327457 14744735 ~ 14745082 (+) True G64015
TU85654 other upstream 1911219 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 2413021 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 2603637 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 5422452 9646579 ~ 9650087 (+) True G63051
TU86778 other downstream 1349435 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 1366421 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 1680244 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 1760497 16833296 ~ 16864454 (+) False LOC103030423
TU86972 other downstream 1791719 16864518 ~ 16888195 (+) True LOC103030423

Expression Profile