RNA id: TU86596


Basic Information

Item Value
RNA id TU86596
length 286
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G64159
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 15745081 ~ 15749573 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAATCAATGCTTTTCGGAAACCCATTTTTTCCAGTAATTAACAAGGTTGCTGCAATATAAATAAAGCAACACAAACCGCATCGAGTTGCTCGAAGGCCATCTTGAAGCCTTTCTTGTAGTCGGTGGTGCCGTTGGCTGTGATATTCTGCACTGCCTTCTTCAGGATCTTCTTGTTGCGAACGTTGGCCTGGACAAGGTTCTGAAAGCAGGCCGCTGGTTTGGCCTCATTGCTGAACAAAAACGACATTGACGTAATCGTCATCAGAGAGAGTCTCCAGCATCTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86574 lncRNA upstream 72149 15665168 ~ 15672932 (+) True G64144
TU86571 lncRNA upstream 115103 15626576 ~ 15629978 (+) True G64141
TU86506 lncRNA upstream 555112 15147026 ~ 15189969 (+) True G64087
TU86507 lncRNA upstream 591820 15147026 ~ 15153261 (+) False G64087
TU86512 lncRNA upstream 621860 15123011 ~ 15123221 (+) True G64091
TU86656 lncRNA downstream 206436 15956009 ~ 15956216 (+) True G64205
TU86700 lncRNA downstream 394712 16144285 ~ 16144718 (+) True G64233
TU86704 lncRNA downstream 400195 16149768 ~ 16149974 (+) True G64237
TU86750 lncRNA downstream 417491 16167064 ~ 16167378 (+) True G64279
TU86767 lncRNA downstream 611330 16360903 ~ 16368394 (+) True G64292
XM_022671152.1 mRNA upstream 173876 15564017 ~ 15571205 (+) True LOC111192874
XM_007245020.3 mRNA upstream 318294 15422001 ~ 15426787 (+) True LOC103045633
XM_022671175.1 mRNA upstream 744499 14997118 ~ 15000582 (+) True fam200b
XM_022671389.1 mRNA upstream 1017726 14721032 ~ 14727355 (+) True LOC111192957
XM_022671394.1 mRNA downstream 154769 15904342 ~ 15923062 (+) True ccdc87
XM_007245047.3 mRNA downstream 154769 15904342 ~ 15923062 (+) False ccdc87
XM_022671395.1 mRNA downstream 154769 15904342 ~ 15923062 (+) False ccdc87
XM_022671396.1 mRNA downstream 154769 15904342 ~ 15922250 (+) False ccdc87
XM_022671397.1 mRNA downstream 156948 15906521 ~ 15923062 (+) False ccdc87
TU86374 other upstream 999999 14744735 ~ 14745082 (+) True G64015
TU85654 other upstream 2583761 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 3085563 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 3276179 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 6094994 9646579 ~ 9650087 (+) True G63051
TU86778 other downstream 672661 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 689647 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 1003470 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 1083723 16833296 ~ 16864454 (+) False LOC103030423
TU86972 other downstream 1114945 16864518 ~ 16888195 (+) True LOC103030423

Expression Profile