RNA id: TU86750


Basic Information

Item Value
RNA id TU86750
length 315
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G64279
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16167064 ~ 16167378 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtCAGGAGCTGGAACAGGGAGAGGACGCAGAGGCGGACGCAAGTGCGAGTTACATTTATTAACatacataaaagaaaaacaagaaacagatcAGAGAAAACACGGGGATCACGAAACCTGACTGACGTCAACAACGCACAATCACGGACGAAGGTAACCAGTAGAGGGGGACTATTTATACCAACGGACACAGActagaaacaggaaacacctgggaagagagggcggagctacaaaacAGGTAGGCCACAGGGGAGGAGACACAGGATAAACACAAGGAGAGTAAATAAACAGACGAAATACATGAAAGCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86704 lncRNA upstream 17090 16149768 ~ 16149974 (+) True G64237
TU86700 lncRNA upstream 22346 16144285 ~ 16144718 (+) True G64233
TU86656 lncRNA upstream 210848 15956009 ~ 15956216 (+) True G64205
TU86596 lncRNA upstream 417491 15745081 ~ 15749573 (+) True G64159
TU86574 lncRNA upstream 494132 15665168 ~ 15672932 (+) True G64144
TU86767 lncRNA downstream 193525 16360903 ~ 16368394 (+) True G64292
TU86766 lncRNA downstream 210282 16377660 ~ 16432412 (+) True G64291
TU86853 lncRNA downstream 323808 16491186 ~ 16532783 (+) True G64362
TU86895 lncRNA downstream 441479 16608857 ~ 16609213 (+) True G64393
TU86909 lncRNA downstream 528562 16695940 ~ 16707096 (+) False G64403
XM_022671399.1 mRNA upstream 25665 16112859 ~ 16141399 (+) False LOC103046856
XM_007245023.3 mRNA upstream 25665 16112948 ~ 16141399 (+) True LOC103046856
XM_022671398.1 mRNA upstream 65540 15998201 ~ 16101524 (+) True LOC103027800
XM_007245022.3 mRNA upstream 213132 15923726 ~ 15953932 (+) True LOC103046551
XM_022671397.1 mRNA upstream 244002 15906521 ~ 15923062 (+) False ccdc87
XM_015604721.2 mRNA downstream 51450 16218828 ~ 16314999 (+) True LOC103047366
XM_015602656.2 mRNA downstream 227948 16395326 ~ 16426623 (+) False arid2
XM_007237948.3 mRNA downstream 227949 16395327 ~ 16426623 (+) True arid2
XM_007237950.3 mRNA downstream 227949 16395327 ~ 16426623 (+) False arid2
XM_007237949.3 mRNA downstream 227950 16395328 ~ 16426623 (+) False arid2
TU86374 other upstream 1421982 14744735 ~ 14745082 (+) True G64015
TU85654 other upstream 3005744 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 3507546 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 3698162 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 6516977 9646579 ~ 9650087 (+) True G63051
TU86778 other downstream 254856 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 271842 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 585665 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 665918 16833296 ~ 16864454 (+) False LOC103030423
TU86972 other downstream 697140 16864518 ~ 16888195 (+) True LOC103030423

Expression Profile