RNA id: TU86763


Basic Information

Item Value
RNA id TU86763
length 2878
RNA type TUCP
GC content 0.51
exon number 5
gene id G64289
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16439220 ~ 16442449 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGAGGTTGTCAGCTGGAAGGACTGTGATGCTGCCTTGCTGTacaggtggaggtggtggagggggTGGTGGCAGACCCTGCACAGCCATGGTGGGCAAAGGGAGAGGAGGGCCTTGAGGATGCATGTGTACTGGTATCTGTGGTGGCATGGTAAACAAAGCAGGCTGGGGGCCGACAGAAGGGGCTCTGGGTACCATAGGCCCTAGAGGGTAGCGCAGAACCCCTAGGACATTGAGCGGCTGGGGTACAACAGCAGGTGGGGCTGGTACTGCTTCATTAGGTAGATGGGTACTTGGCTCACTCTGTGGAAGGTCTGTTTGTTTGGAGAAACCGGCTGCAGGCTGTTCGTCTTCTTGTTTGTTCCAGATGCTCCCACCTGTCCCAGGACCTCGTTCTCTTCGCGAGTAGTAGCTCTGTACATCAGCAGGGAGGGTTCGCCGTACTGCCCAGCTGGAAGCAGAAGACCATCCAGACCGATCCAAGGGTGTATCGGAGGAGTCTGACTCTTTCCTCTTTCCTCCAGGTCTGTTCTCATTGAAGCGACTATAGGAGTCACTCCCTGCGTTATTTGTCGTCCCTGAGAAAGAGTTACGCTGCTGCCGCCAGTTATCTGCTCCAGGCTCCCCTTGCATACCAAAGGGCCGCTGCTGCCCACCCCGACCACGACCACCTCCACCACGAGGCCAAGAGTCTGCAGGAGCGTCATCAAAATTCTCCTGTTCACGCTGCCTGCCATCACCAGCTCCCCACGACCTTTCCTTCACCCAGGATGGAACATCTGACTGACCTCTGTCTGGTGATGTTTCATGAAAGCTGCCATTGCCTGAAGAGTTGAAACCCTCTCTTGATGAAAAGTGATTCTGTCTCTCTGGATTGTTCCTCCAGCTAGAGTTGCGGGCGTTGCGTGCACCTCGCCAGCTTTCGCCTCCCCAAGAGTCTCTCTTTCGTGGCGACTGCCCTCCTTGATCATTACGTTCTGGAGAAGGACTTCTTCGGTTCTGCCTGTTCCTTGATCTCGAGCGTGACCTCGAGCGGCTTCTAGAACGACTGCGAGAACGCCTCCTGCTTCGTCTGTCTCTACTGCGGTTCCGCCTGGAGCTGCCGCGCTCCTCTTCATGATCACGGCCTCGACCCCTGGACGGTGACCCAGCATTACGACTGCGATCACGATCTCGATCCCGGTCACGATCTCGATCCCTTGACCGGGATCTTCTTGATCCCTCCCCTCTTGATTCCCTCTTAGGGGACCAGGTGGTTGTGGGTGAGTGGAAACGAGACTTTCGGTGGCTTCTTTCTCTCCTGTCCGAGGATCTCTGGTCTTTTGAAGAGTCAGAGCTAGGCTCCTGCTCCTTGCTCTTCTGCTCTCCCTCCTGACTGGGGATCTGATTAACAGAAGAGATCTCTGGTGCAGGAACAGCACTATTATTCTCAGAGACTGTCTCAAAAGGAAGAGAAGCATCATCTGAGCCAGGTGAGTCACAATCCATAGGAATGGATTCAGTGTTATCCTGATGACCACTGGCACCCAGGGATTCATCTGGCTTTGTCCCCAGATTCACAGCAAGGTCATCAGAGTCTTTTGGCAAAGAGTTTTCACTTGTATGTTGAGGTGAGCTGCTGTTAGACACAGGTGGCTTGGAGACTTCACTTGTTTCACTTTTACACTCATCAGCCTCAACTGGAGTTTCAGATTCTGTTATTCTGTCATCATCAGTTGTCTTGTCTAAAGAGATCTCTGCTGCAGTATCCTGAGGTTGGACAGTTGAAATGGCAGAGGTGTCAGTAGTACCCTCTACTTTTACCTGCTCTGCACAGGGAGGAGACAGttgctttttcttttcaatAGACTGTTCTCCCTCAGGCGCTGCTGGCTCTTCCTCAGATTCATCATCATCAGAAGAATCCAACCTCTCTTGAAAACAAGCCTGATTGTCCTCTGTCTTGAGTGTGTCATCTTCCTCCATTTCTTCATCTTGCTGTTTTTCACTGAGAGGGGAAGCTTGTTCACACTCTTCAGTGTCCATTTTAGGTGCACTTCCATCAGAATCTACAGAACTTAAACTTGCATCCATATCAACACCTACATCTTTTTGATATGGACTCTGATCTGCTTTTTCCTCCTCATCAGACTCCGGATCTGCATGTGCCTCCTCATCAGACTCCAGATCTGCATGTGCCTCCTCATCTGTCCCATGATCAGATTTTGCGTCTTCATCTGTTCTCTGATCTTCGTTGGCCTCATCATCTGTCCCCTGATCTTCCTTTGCCTCCTCATCTGTCCCCTGATCTTCCTTTGCCTCCTCATCTGTCCCCTGATCTTCCCTTGCCTCTTCATCTGTCCCCTCATCAGCTTTTGCATCATGTGTCCCCTGATCTGCATTTGTCTCATCATCTGTGTCATCATCTGTGTTGTGATTTTCTTTAGCCTCTTCATCTGTTTCCCTCTCTTCTTTTGCCTCCCCATCTGTCCTCAATTCCTGTGTTGACTCCTCCATATCAATTCCCAGTTCTTCCTGACTCCCCTGTCCAGCTTCTGGTTCTTCCTCATTGCCCTCATCTTCACTTTCCACCAATGACTTTCGGGCAGTCTTCTTTTTTGCACCCCCTTTCCTTCTGTTACCAGGTTTCTGCTTCCCAGCCTGCCTTCCTTTGCTTGTAGAAGCACGCATGTCACTTGATGCACTGCCAGCAGGCGAGGAAGAGTCAGAGTCCAAATGCTGAGGCTTAGTGGATACTGGTTCCTCATTCCCACTTTTTCTACGCCTGGAAGAGCGGCGAGATGTAACGTTCTGTTCTTGACTCACAGAGTTTTTGGATGCAGACCCTCGGGTGCTCTTTCTACCCTCACCTTTGGGGCACGTTACCGCACAAGCCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86766 lncRNA upstream 6808 16377660 ~ 16432412 (+) True G64291
TU86767 lncRNA upstream 70826 16360903 ~ 16368394 (+) True G64292
TU86750 lncRNA upstream 271842 16167064 ~ 16167378 (+) True G64279
TU86704 lncRNA upstream 289246 16149768 ~ 16149974 (+) True G64237
TU86700 lncRNA upstream 294502 16144285 ~ 16144718 (+) True G64233
TU86853 lncRNA downstream 48737 16491186 ~ 16532783 (+) True G64362
TU86895 lncRNA downstream 166408 16608857 ~ 16609213 (+) True G64393
TU86909 lncRNA downstream 253491 16695940 ~ 16707096 (+) False G64403
TU86910 lncRNA downstream 258664 16701113 ~ 16707096 (+) True G64403
TU86941 lncRNA downstream 284583 16727032 ~ 16782114 (+) True G64427
XM_015602656.2 mRNA upstream 12597 16395326 ~ 16426623 (+) False arid2
XM_007237948.3 mRNA upstream 12597 16395327 ~ 16426623 (+) True arid2
XM_007237950.3 mRNA upstream 12597 16395327 ~ 16426623 (+) False arid2
XM_007237949.3 mRNA upstream 12597 16395328 ~ 16426623 (+) False arid2
XM_015604721.2 mRNA upstream 124221 16218828 ~ 16314999 (+) True LOC103047366
XM_015602657.2 mRNA downstream 173122 16615571 ~ 16651658 (+) False LOC103026270
XM_007237940.3 mRNA downstream 178675 16621124 ~ 16651658 (+) False LOC103026270
XM_007237939.2 mRNA downstream 178679 16621128 ~ 16651658 (+) False LOC103026270
XM_007237941.3 mRNA downstream 184080 16626529 ~ 16651658 (+) False LOC103026270
XM_007237942.3 mRNA downstream 190357 16632806 ~ 16651658 (+) True LOC103026270
TU86778 other upstream 12607 16422234 ~ 16426613 (+) False arid2
TU86374 other upstream 1694138 14744735 ~ 14745082 (+) True G64015
TU85654 other upstream 3277900 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 3779702 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 3970318 12468050 ~ 12468902 (+) True G63432
TU86945 other downstream 310594 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 390847 16833296 ~ 16864454 (+) False LOC103030423
TU86972 other downstream 422069 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other downstream 430638 16873087 ~ 16875941 (+) True G64449
TU87328 other downstream 1247760 17690209 ~ 17719428 (+) False G64698

Expression Profile