RNA id: TU86778


Basic Information

Item Value
RNA id TU86778
length 1947
RNA type TUCP
GC content 0.43
exon number 4
gene id arid2
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16395326 ~ 16426623 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTAGGAGCAAGAATGCTTTAACCCTTCTATCATGTTATTGAAGTATTTGTGGAATCAACGTGTGTTCTTGTTTGATTTCTGCAGGACAAGCACTGCTCGAGGGAAGACCTTTTAGCTGGACTTAAGCTGGAGGAACAAACACAAGGCAGCAATCCCAATACTTCCAAgtCTCCTCCACTGGCGGGCGGTAGTCCAGCTCCTCCCAGGCCGCAAAAAGCTATAGTCAATCACCCCAGTGCGGCTCTAATGGCCCTGCGCCGCGGCTCACGCAACCTGGTGTTCAGGGACTTCACTgATGATAAAGAGGGACCAATGACCAAACATATTAGATTAACTGCTGCCTTATCGTTAAAGAACATCGCCAAGTATTCAGACTGTGGACGAAAgTTGGTAAAGCGGCATGAGAACCACCTCTCTGTTCTGGCACTCAGCAGTATGGAGGTTTCCACCACACTTGCTAAATGCCTTTACGAACTCTCACGCTCTCTGCAGGCTTGATCCCAgctgaacccaaaaaaaacattcaaatggaaaaaaagaaatttcgTCCTCCGCCGGCACGCAAGGTGCTTGGCGTTCACAGACGCGGGCGATGCCTCTCCTCCCCTCACACCACTCCCTCCATTCCATTCTCTGTGCGTTGGGATTTCTGCACCACCACTCAATCCCCCTCACCCCCTCACTTACAAACTGCCACGGGTCTTCCACCAGCCACTCAGAAACCAGCGCACGCTCAACTTTCTAAACGAGCCACCTCTCCACCCCCACCCCGAGAACAAGCCGCCTCTCCGCCCCCAGCCCGAATgagcacatttttatttctggTCCTGGAGGAAAGGTGGTTGGGGCAGGGGATTCGGATCGGGTGAGAGGAGGTGTGGGGGGGGTCTGTGGATGAGGGGGTGGAGCAGGGGCAAACAGGTGTGGCtagattgtttttgttttttctttagaaCTTGATAGCTTTGGTTTTCTTACTTGAGCCGATtatattttcacttatttattattgaaataaatacCAATATgattaaatgagaaaaaaaatcttgtaaatatttgtgaataaatataaagtaaaaaaagaaaaaaaagatatcatCTTTCATGCCGCTGCAGCCACTGGAGAGTTCACTCTGTGGAGTATCAGAAGCATTATCTtggtagtttcttttttttttcttattatttttttggatcCCTGGTTACTTGTATAAGATGTGATTCTATACTCAGCAGTGGATGAATGTACTTAAAAACGTGTAAATATTCTACAAAGGTACTGATGCTGTAAAGTTTAGGGAGGGGGATGGGGAACAGGTTTTTTGTGGaactgtgatattttttttttctttcctttttttttcttttccatttttgtacTATTATAACTTGTAGAACTCATTTTGCTGGCTGAAAGAGTATGGAATAATATATCTCATGTTATTTTGtagaagagcaaaaaaaaatcacaaaaaaatacacaaatattgAAGGTATTTTCCCCCCCTCTGACATGTATCCACTATAAGCGTCACTGTACGAGCCCTCTGCCCGTACTCAattctttttgtatttgtaaattgGTTTAAATACATGGAGTTTTATACAGGTTTTCTCCTGTGTTATTTGCTTTCTGTGCATATGATATTTTCCTCCCTACCTTTTTTCTATCTTAATATAGTGTGGAATTTTATCGTACTATTTTTTCATTCTTAATACCATGCCACATTCCGGCTCCCTGCTTCCCGGGCTGTCCTCCCTACAGTGTGTCGTGTAACATTTATAACTGCCTGTTGTGTTAGCATCCGAGCAGGGGCTCTCCCCCTCACCATTTCTGCAGTGTCAGTAGGGTGTGcgatatatacatatacctaACAGTCTGTTCTAGGTTGGCTTAATTTACTTGGGTGactgtttatagtttttaaataaaagactgAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86767 lncRNA upstream 53840 16360903 ~ 16368394 (+) True G64292
TU86750 lncRNA upstream 254856 16167064 ~ 16167378 (+) True G64279
TU86704 lncRNA upstream 272260 16149768 ~ 16149974 (+) True G64237
TU86700 lncRNA upstream 277516 16144285 ~ 16144718 (+) True G64233
TU86656 lncRNA upstream 466018 15956009 ~ 15956216 (+) True G64205
TU86853 lncRNA downstream 64573 16491186 ~ 16532783 (+) True G64362
TU86895 lncRNA downstream 182244 16608857 ~ 16609213 (+) True G64393
TU86909 lncRNA downstream 269327 16695940 ~ 16707096 (+) False G64403
TU86910 lncRNA downstream 274500 16701113 ~ 16707096 (+) True G64403
TU86941 lncRNA downstream 300419 16727032 ~ 16782114 (+) True G64427
XM_015604721.2 mRNA upstream 107235 16218828 ~ 16314999 (+) True LOC103047366
XM_022671399.1 mRNA upstream 280835 16112859 ~ 16141399 (+) False LOC103046856
XM_007245023.3 mRNA upstream 280835 16112948 ~ 16141399 (+) True LOC103046856
XM_022671398.1 mRNA upstream 320710 15998201 ~ 16101524 (+) True LOC103027800
XM_007245022.3 mRNA upstream 468302 15923726 ~ 15953932 (+) True LOC103046551
XM_015602657.2 mRNA downstream 188958 16615571 ~ 16651658 (+) False LOC103026270
XM_007237940.3 mRNA downstream 194511 16621124 ~ 16651658 (+) False LOC103026270
XM_007237939.2 mRNA downstream 194515 16621128 ~ 16651658 (+) False LOC103026270
XM_007237941.3 mRNA downstream 199916 16626529 ~ 16651658 (+) False LOC103026270
XM_007237942.3 mRNA downstream 206193 16632806 ~ 16651658 (+) True LOC103026270
TU86374 other upstream 1677152 14744735 ~ 14745082 (+) True G64015
TU85654 other upstream 3260914 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 3762716 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 3953332 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 6772147 9646579 ~ 9650087 (+) True G63051
TU86763 other downstream 12607 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 326430 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 406683 16833296 ~ 16864454 (+) False LOC103030423
TU86972 other downstream 437905 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other downstream 446474 16873087 ~ 16875941 (+) True G64449

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU265064 True 212 lncRNA 0.42 1 CI01000054 6441654 ~ 6441865 (-)
eurasian perch (Perca fluviatilis) TU311091 False 936 lncRNA 0.35 1 NC_053134.1 21428303 ~ 21429238 (+)
tiger barb (Puntius tetrazona) TU265064 False 1407 lncRNA 0.43 2 NW_025047891.1 1180694 ~ 1182218 (+)