RNA id: TU86853



Basic Information


Item Value
RNA id TU86853
length 1045
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G64362
representative True

Chromosome Information


Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16491186 ~ 16532783 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TATTTCTCCAGAATGCCACAACCTCACTGAGATTTTAAAGATAAGAACTAAGGTACCACAGAATACCTGTTTGGTTAAATACCACCAGCTGCAGTTCCTTTTGCACCAACATCCTTTAAATTGCTTTTATCTCCTTTGTCTTTACCCACCTGATCTCCATAGTGTAAACATATGTATTAAGAAGGAAACTTGTGGACGTCCACAACATGGGGCTACTTTGAATACCTGGTTATGCCATTTGTTCTAGCTACAGTTCAATAACGAAATAAAATGCCATGGATTTGACaatttaactgaattaaaaaacgCTCTCCTGGGAAGACAAGAAACGACTGATGCCAGTGAAACAAAACCTAGTTAGTTTGCATGTTTGTATGGATGCGCCAGTGCGTGAACATACATTAAAAATCTAGAAGTGCTTTTTGTACATAGACCAAATCCCCACAACCTCCTGAAGCATCGAGGTGGCCTTCTTTTTCTCAGAGACACATCGTCTGTCTGAGGCAGTTAGGTCAGTCTCGTCATCTGTtcatctccctttctctctctctctctttctctctccgagGAGCTCTCGGTGACATCACTTGAAGCCAGGCTgttgacacagaggccattggTGGAGCGACGCATGGAGCGCGAGCAGTTCGGCCTCCCCGTGTCACAGCCAGAGTTTCACAACTACATTCACTACGGTTCAGCTTTCTCAGTACATAACATTACAAAACAACTACAGAACACACGCTCAGAGGATGtgcggtggtggtggtggtggtggtgacgAGGATGATGATGACACAgaggacacagagagagaaagagagacggcTGAACATCCGCTTGTAATACTGTGTGTGAAGGGTGTACGCTGTGACGGACGGTCACATGGCTCATAGTAACACTAGTCTGTGTCTCTTTGGGGAGGTTGGGGTGGGCCGCCTGCTGTTTAGTGGCCGCCTCCAGACCCAGAGGGGTTGTGGATCCAGTCGAGGATGATGAGGGACAGGCTGCCAATCATGAAGATGATGCCCACCACCAGGAAGAC

Function


GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0006508 proteolysis biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05020 Prion disease

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU86766 lncRNA upstream 58774 16377660 ~ 16432412 (+) True G64291
TU86767 lncRNA upstream 122792 16360903 ~ 16368394 (+) True G64292
TU86750 lncRNA upstream 323808 16167064 ~ 16167378 (+) True G64279
TU86704 lncRNA upstream 341212 16149768 ~ 16149974 (+) True G64237
TU86700 lncRNA upstream 346468 16144285 ~ 16144718 (+) True G64233
TU86895 lncRNA downstream 76074 16608857 ~ 16609213 (+) True G64393
TU86909 lncRNA downstream 163157 16695940 ~ 16707096 (+) False G64403
TU86910 lncRNA downstream 168330 16701113 ~ 16707096 (+) True G64403
TU86941 lncRNA downstream 194249 16727032 ~ 16782114 (+) True G64427
TU86987 lncRNA downstream 364767 16897550 ~ 16904677 (+) True G64462
XM_015602656.2 mRNA upstream 64563 16395326 ~ 16426623 (+) False arid2
XM_007237948.3 mRNA upstream 64563 16395327 ~ 16426623 (+) True arid2
XM_007237950.3 mRNA upstream 64563 16395327 ~ 16426623 (+) False arid2
XM_007237949.3 mRNA upstream 64563 16395328 ~ 16426623 (+) False arid2
XM_015604721.2 mRNA upstream 176187 16218828 ~ 16314999 (+) True LOC103047366
XM_015602657.2 mRNA downstream 82788 16615571 ~ 16651658 (+) False LOC103026270
XM_007237940.3 mRNA downstream 88341 16621124 ~ 16651658 (+) False LOC103026270
XM_007237939.2 mRNA downstream 88345 16621128 ~ 16651658 (+) False LOC103026270
XM_007237941.3 mRNA downstream 93746 16626529 ~ 16651658 (+) False LOC103026270
XM_007237942.3 mRNA downstream 100023 16632806 ~ 16651658 (+) True LOC103026270
TU86763 other upstream 48737 16439220 ~ 16442449 (+) True G64289
TU86778 other upstream 64573 16422234 ~ 16426613 (+) False arid2
TU86374 other upstream 1746104 14744735 ~ 14745082 (+) True G64015
TU85654 other upstream 3329866 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 3831668 12659448 ~ 12659518 (+) True trnag-gcc_1
TU86945 other downstream 220260 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 300513 16833296 ~ 16864454 (+) False LOC103030423
TU86972 other downstream 331735 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other downstream 340304 16873087 ~ 16875941 (+) True G64449
TU87328 other downstream 1157426 17690209 ~ 17719428 (+) False G64698

Expression Profile