RNA id: TU86884


Basic Information

Item Value
RNA id TU86884
length 583
RNA type TUCP
GC content 0.56
exon number 1
gene id G64387
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16585065 ~ 16585647 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccaggattggcaaattcgccactggcgccttgtgctcttcacagatgaaagcaggttcacactgagcacatgacagacgtgacagagtctggagacgccgtggagagcggtctgctgcctgcaacatccttcagcatgaccggtttggcagtgggtcagtaatggtgtggggtggcatttctttggagggccgcacagccctccatgtgctcaccagaggtagcctgactgccattaggtaccgagatgagatcctcagaccccttgtgagaccatatgctggtgcggttggccctgggttcctcctaatgcaggacaatgctagacctcatgtggctggagtgtgtcagcagttcctgcaagatgaaggcattgaagctatggactggcccgcccgttccccagacctgaatccgattgagcacatctgggacatcatgtctcgctccatccaccaacgtcacgttgcaccacagactgtccagaagttggcggatgctttagtccaggtctgggaggagatccctcaggagaccatccgccacctcatcaggagcatgcccaggcgttgtacggaggtcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86879 lncRNA downstream 70197 16508936 ~ 16514868 (-) True G64382
TU86877 lncRNA downstream 95134 16489509 ~ 16489931 (-) True G64380
TU86807 lncRNA downstream 216675 16360895 ~ 16368390 (-) True G64321
TU86809 lncRNA downstream 223858 16312131 ~ 16361207 (-) False G64321
TU86806 lncRNA downstream 291097 16293718 ~ 16293968 (-) True G64320
TU86926 lncRNA upstream 60531 16646178 ~ 16648622 (-) True G64418
TU86933 lncRNA upstream 79374 16665021 ~ 16666355 (-) False G64422
TU86934 lncRNA upstream 79374 16665021 ~ 16667239 (-) True G64422
TU86935 lncRNA upstream 79374 16665021 ~ 16667239 (-) False G64422
XR_002650193.1 lncRNA upstream 126426 16712073 ~ 16714042 (-) True LOC111192962
XM_007237945.3 mRNA downstream 7249 16529205 ~ 16577816 (-) False LOC103027662
XM_022671404.1 mRNA downstream 22323 16529205 ~ 16562742 (-) False LOC103027662
XM_007237944.3 mRNA downstream 23250 16529205 ~ 16561815 (-) True LOC103027662
XM_007237947.3 mRNA downstream 115708 16459740 ~ 16469357 (-) False slc38a2
XM_007237946.3 mRNA downstream 115708 16459740 ~ 16469357 (-) True slc38a2
XM_007237943.3 mRNA upstream 68466 16654113 ~ 16660507 (-) True LOC103027149
XM_022671153.1 mRNA upstream 110434 16696081 ~ 16707075 (-) True LOC111192875
XM_022671410.1 mRNA upstream 309933 16895580 ~ 16945665 (-) True LOC103039070
XM_022671411.1 mRNA upstream 309933 16895580 ~ 16945445 (-) False LOC103039070
XM_022671416.1 mRNA upstream 459867 17045514 ~ 17079220 (-) False LOC103042974
TU86473 other downstream 1590233 14994164 ~ 14994832 (-) True G64060
TU86395 other downstream 1798916 14785321 ~ 14786149 (-) True G64034
TU85708 other downstream 4219326 12320555 ~ 12365739 (-) True G63516
TU85294 other downstream 6173834 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 6962277 9618661 ~ 9622788 (-) True G63104
TU87029 other upstream 296688 16882335 ~ 16887903 (-) False G64492
TU87032 other upstream 296688 16882335 ~ 16887903 (-) True G64492
TU87035 other upstream 296688 16882335 ~ 16887903 (-) False G64492
TU87037 other upstream 297684 16883331 ~ 16887903 (-) False G64492
TU87262 other upstream 949649 17535296 ~ 17597545 (-) False LOC111192911

Expression Profile