RNA id: TU86895


Basic Information

Item Value
RNA id TU86895
length 357
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G64393
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16608857 ~ 16609213 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGCGTCGAATGAAACGgttttaataagcagttaaagtttctataatttttttctgcctgAAATTATTTCAAGCTCTGAGTGGATATAAATGGGGAttataggagactggattgGCGGATTCTCTTACGTGTGGActcgttttgaaggtaagagcgtGGGGGATGCGCtggtgggggttggggggggggtggtgtgcGGTGTGTCCTGAGGTAACCCCAGGACGAAACCCGAGCAGATTTTAACTGTAAACACGCGCTCCGACGCGCTCTTTCAGCTTTAATTCAAAAAccgtacatcctacagtaaaacggAGCACAGTTCCGGAATCCGGAGAgacagacggttcgaatggtgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86853 lncRNA upstream 76074 16491186 ~ 16532783 (+) True G64362
TU86766 lncRNA upstream 176445 16377660 ~ 16432412 (+) True G64291
TU86767 lncRNA upstream 240463 16360903 ~ 16368394 (+) True G64292
TU86750 lncRNA upstream 441479 16167064 ~ 16167378 (+) True G64279
TU86704 lncRNA upstream 458883 16149768 ~ 16149974 (+) True G64237
TU86909 lncRNA downstream 86727 16695940 ~ 16707096 (+) False G64403
TU86910 lncRNA downstream 91900 16701113 ~ 16707096 (+) True G64403
TU86941 lncRNA downstream 117819 16727032 ~ 16782114 (+) True G64427
TU86987 lncRNA downstream 288337 16897550 ~ 16904677 (+) True G64462
TU87054 lncRNA downstream 343368 16952581 ~ 16952839 (+) True G64509
XM_015602656.2 mRNA upstream 182234 16395326 ~ 16426623 (+) False arid2
XM_007237948.3 mRNA upstream 182234 16395327 ~ 16426623 (+) True arid2
XM_007237950.3 mRNA upstream 182234 16395327 ~ 16426623 (+) False arid2
XM_007237949.3 mRNA upstream 182234 16395328 ~ 16426623 (+) False arid2
XM_015604721.2 mRNA upstream 293858 16218828 ~ 16314999 (+) True LOC103047366
XM_015602657.2 mRNA downstream 6358 16615571 ~ 16651658 (+) False LOC103026270
XM_007237940.3 mRNA downstream 11911 16621124 ~ 16651658 (+) False LOC103026270
XM_007237939.2 mRNA downstream 11915 16621128 ~ 16651658 (+) False LOC103026270
XM_007237941.3 mRNA downstream 17316 16626529 ~ 16651658 (+) False LOC103026270
XM_007237942.3 mRNA downstream 23593 16632806 ~ 16651658 (+) True LOC103026270
TU86763 other upstream 166408 16439220 ~ 16442449 (+) True G64289
TU86778 other upstream 182244 16422234 ~ 16426613 (+) False arid2
TU86374 other upstream 1863775 14744735 ~ 14745082 (+) True G64015
TU85654 other upstream 3447537 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 3949339 12659448 ~ 12659518 (+) True trnag-gcc_1
TU86945 other downstream 143830 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 224083 16833296 ~ 16864454 (+) False LOC103030423
TU86972 other downstream 255305 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other downstream 263874 16873087 ~ 16875941 (+) True G64449
TU87328 other downstream 1080996 17690209 ~ 17719428 (+) False G64698

Expression Profile