RNA id: TU86909


Basic Information

Item Value
RNA id TU86909
length 581
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id G64403
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16695940 ~ 16707096 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtatatgttggTATCGGCAGATAGATACATGTGTAATAAACAATATCTGCATCGGCTCACAATTCTCACATCGGCCTGATAaggtttttttaaacaattaaagggACAAAGTAAATTACAgcctgattattaataattaccTGTAAATGGAGTTTTTGTAGCTGAACTGAGTTTCGATGATGCCTCTGGTCCTCACTCGCACCCTCAGGACATCTGCTTCAGTTGGGACGTAGTTTGGAGCGATAATTCGGCCCATATTCTCAAAGAAAcgcAAAGCTGACCAGCTCGTCTTTAGTAAAACCCCGGCTGTAGATTATCTTCATCTGCTTCAGCAGGGTACTTTTACCACTCTCTGGAGTCCCCAGAAGAAGGATCTTCACCACGTTTGCCTCCTGTCTGCCACGTTCTCCCAGATCCTGGTCTATCTTGGCACTGTGGGCCATGGCCCTCTTCTCCTTTTCAGAGACTCTGGAGCGAAGGCTTTGCCGCAGGGACCTGGCACAGTCCTCAGGTTTGAGTTTGGCGCCATACTGCGGTCGATTCAGCCACACGTGACCGCAGCCGCCATTCTTAACAGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86895 lncRNA upstream 86727 16608857 ~ 16609213 (+) True G64393
TU86853 lncRNA upstream 163157 16491186 ~ 16532783 (+) True G64362
TU86766 lncRNA upstream 263528 16377660 ~ 16432412 (+) True G64291
TU86767 lncRNA upstream 327546 16360903 ~ 16368394 (+) True G64292
TU86750 lncRNA upstream 528562 16167064 ~ 16167378 (+) True G64279
TU86941 lncRNA downstream 19936 16727032 ~ 16782114 (+) True G64427
TU86987 lncRNA downstream 190454 16897550 ~ 16904677 (+) True G64462
TU87054 lncRNA downstream 245485 16952581 ~ 16952839 (+) True G64509
TU87056 lncRNA downstream 262440 16969536 ~ 16969896 (+) True G64511
TU87058 lncRNA downstream 296553 17003649 ~ 17003848 (+) True G64513
XM_015602657.2 mRNA upstream 44282 16615571 ~ 16651658 (+) False LOC103026270
XM_007237940.3 mRNA upstream 44282 16621124 ~ 16651658 (+) False LOC103026270
XM_007237939.2 mRNA upstream 44282 16621128 ~ 16651658 (+) False LOC103026270
XM_007237941.3 mRNA upstream 44282 16626529 ~ 16651658 (+) False LOC103026270
XM_007237942.3 mRNA upstream 44282 16632806 ~ 16651658 (+) True LOC103026270
XM_022671406.1 mRNA downstream 9956 16717052 ~ 16764567 (+) True LOC103042039
XM_007241775.3 mRNA downstream 61314 16768410 ~ 16779685 (+) True LOC103041732
XM_022671408.1 mRNA downstream 76817 16783913 ~ 16811230 (+) True LOC103035087
XM_022671407.1 mRNA downstream 77010 16784106 ~ 16811230 (+) False LOC103035087
XM_022671409.1 mRNA downstream 126194 16833290 ~ 16882939 (+) False LOC103030423
TU86763 other upstream 253491 16439220 ~ 16442449 (+) True G64289
TU86778 other upstream 269327 16422234 ~ 16426613 (+) False arid2
TU86374 other upstream 1950858 14744735 ~ 14745082 (+) True G64015
TU85654 other upstream 3534620 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 4036422 12659448 ~ 12659518 (+) True trnag-gcc_1
TU86945 other downstream 45947 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 126200 16833296 ~ 16864454 (+) False LOC103030423
TU86972 other downstream 157422 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other downstream 165991 16873087 ~ 16875941 (+) True G64449
TU87328 other downstream 983113 17690209 ~ 17719428 (+) False G64698

Expression Profile