RNA id: TU86935


Basic Information

Item Value
RNA id TU86935
length 827
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G64422
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16665021 ~ 16667239 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGAAAGAAACGCCTCCACGCGTAAAAATATGACGCGTCCACACGTAAAAAAATCACGTGTACAGGCGGTAAAACTGTTCGTGTATACACGTTTTGGCATCTAACATCCAATCGGTAAACGCGCCTATGCATACATTTGCATTGTAATAAGGCAGCCTGACAACACATGATGTCATGCAACGTATTGTATTCCATATTCATAAGACGCTTACGTGGGTTACAACGCAGTGTCTACGTACCGTGACATAGCcccatacatactcatacacactctgcaCGCAAGGTCCACATAACTGAAACGTTGTAATCATGTGTCTATGATGTACCCCCTATTTCACATGATGTAACCCCCGCCATTTTATATCCATAGTGTTTACCCTGCCTTTAGGTCAGTGCAATCATGGCTCTGCAAAATTTTCTGTTGAATTGTAGAACAGTTTTGCTGACTGCACAAGGCTTGCAATGTCAGATCATGTTCAATCAGATGCTGAGCACATACTGACAAGGTTCCCTGAGTAGGGCACTGTGGCATTAAAAATACTTGTTTATCCACATTTTAATCTGTCCTAGCAGATATGAGGTGTTGTACAGGCATATTAAGACTGCTTCTACAGCTCAGTAAATGTTGCCATCTACAGGCTGCATATTGCAACTGCGGCTTTTTGAGATGGACAGTAAATCCCAAGACGTTAATTTTTTACGTCTGTACACGTAATATATCCACGTCTGTACAGGTGAAAAAAAGCACGTGATGTACAGACGGCATAAATTTACGCCTCCACACGTAAAAAGATTACGTCTGTACACGTAAAAAGATAACGTCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86926 lncRNA downstream 16399 16646178 ~ 16648622 (-) True G64418
TU86879 lncRNA downstream 150153 16508936 ~ 16514868 (-) True G64382
TU86877 lncRNA downstream 175090 16489509 ~ 16489931 (-) True G64380
TU86807 lncRNA downstream 296631 16360895 ~ 16368390 (-) True G64321
TU86809 lncRNA downstream 303814 16312131 ~ 16361207 (-) False G64321
XR_002650193.1 lncRNA upstream 44834 16712073 ~ 16714042 (-) True LOC111192962
TU86915 lncRNA upstream 44843 16712082 ~ 16714049 (-) False LOC111192962
TU87006 lncRNA upstream 95971 16763210 ~ 16766262 (-) True G64479
TU87007 lncRNA upstream 95971 16763210 ~ 16766262 (-) False G64479
TU87015 lncRNA upstream 137322 16804561 ~ 16821444 (-) True G64485
XM_007237943.3 mRNA downstream 4514 16654113 ~ 16660507 (-) True LOC103027149
XM_007237945.3 mRNA downstream 87205 16529205 ~ 16577816 (-) False LOC103027662
XM_022671404.1 mRNA downstream 102279 16529205 ~ 16562742 (-) False LOC103027662
XM_007237944.3 mRNA downstream 103206 16529205 ~ 16561815 (-) True LOC103027662
XM_007237946.3 mRNA downstream 195664 16459740 ~ 16469357 (-) True slc38a2
XM_022671153.1 mRNA upstream 28842 16696081 ~ 16707075 (-) True LOC111192875
XM_022671410.1 mRNA upstream 228341 16895580 ~ 16945665 (-) True LOC103039070
XM_022671411.1 mRNA upstream 228341 16895580 ~ 16945445 (-) False LOC103039070
XM_022671416.1 mRNA upstream 378275 17045514 ~ 17079220 (-) False LOC103042974
XM_022671415.1 mRNA upstream 379124 17046363 ~ 17096825 (-) False LOC103042974
TU86884 other downstream 79374 16585065 ~ 16585647 (-) True G64387
TU86473 other downstream 1670189 14994164 ~ 14994832 (-) True G64060
TU86395 other downstream 1878872 14785321 ~ 14786149 (-) True G64034
TU85708 other downstream 4299282 12320555 ~ 12365739 (-) True G63516
TU85294 other downstream 6253790 10314799 ~ 10411231 (-) False G63217
TU87029 other upstream 215096 16882335 ~ 16887903 (-) False G64492
TU87032 other upstream 215096 16882335 ~ 16887903 (-) True G64492
TU87035 other upstream 215096 16882335 ~ 16887903 (-) False G64492
TU87037 other upstream 216092 16883331 ~ 16887903 (-) False G64492
TU87262 other upstream 868057 17535296 ~ 17597545 (-) False LOC111192911