RNA id: TU86945



Basic Information


Item Value
RNA id TU86945
length 368
RNA type TUCP
GC content 0.54
exon number 2
gene id G64431
representative True

Chromosome Information


Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16753043 ~ 16753560 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TTTTCAGTAGGAATATTTACTTGTGTTCATTGTTACAACCCATTCCAGTAACAGAAAATATGTGTTACCAAAACTGCTCCGCCACCCAGTTACCAGATCTGCTCCGCCACCCCGTTACCAAAACTGCTCCGCCACCCCGTTACCAAAACTGCTCCGCCACCCCGTTACCAAATCTGCTCCACCACCCCGTTACCAAAACTGCTCCGCCACCCCGTTACCAAAACTGCTCCGCCACCCAGTTACCAAATCTGCTCCGCCACCCCGTTACCAAAACTGCTCCGCCACCCCGTTACCAAAACTGCTCCGCCACCCCGTTACCAAAACTGCTCCGCCACCCCGTTACCAAAACTGCTCCGCCACCCAGTTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU86909 lncRNA upstream 45947 16695940 ~ 16707096 (+) False G64403
TU86910 lncRNA upstream 45947 16701113 ~ 16707096 (+) True G64403
TU86895 lncRNA upstream 143830 16608857 ~ 16609213 (+) True G64393
TU86853 lncRNA upstream 220260 16491186 ~ 16532783 (+) True G64362
TU86766 lncRNA upstream 320631 16377660 ~ 16432412 (+) True G64291
TU86987 lncRNA downstream 143990 16897550 ~ 16904677 (+) True G64462
TU87054 lncRNA downstream 199021 16952581 ~ 16952839 (+) True G64509
TU87056 lncRNA downstream 215976 16969536 ~ 16969896 (+) True G64511
TU87058 lncRNA downstream 250089 17003649 ~ 17003848 (+) True G64513
TU87061 lncRNA downstream 286407 17039967 ~ 17042012 (+) True G64515
XM_015602657.2 mRNA upstream 101385 16615571 ~ 16651658 (+) False LOC103026270
XM_007237940.3 mRNA upstream 101385 16621124 ~ 16651658 (+) False LOC103026270
XM_007237939.2 mRNA upstream 101385 16621128 ~ 16651658 (+) False LOC103026270
XM_007237941.3 mRNA upstream 101385 16626529 ~ 16651658 (+) False LOC103026270
XM_007237942.3 mRNA upstream 101385 16632806 ~ 16651658 (+) True LOC103026270
XM_007241775.3 mRNA downstream 14850 16768410 ~ 16779685 (+) True LOC103041732
XM_022671408.1 mRNA downstream 30353 16783913 ~ 16811230 (+) True LOC103035087
XM_022671407.1 mRNA downstream 30546 16784106 ~ 16811230 (+) False LOC103035087
XM_022671409.1 mRNA downstream 79730 16833290 ~ 16882939 (+) False LOC103030423
XM_022671177.1 mRNA downstream 555505 17309065 ~ 17556553 (+) True LOC111192909
TU86763 other upstream 310594 16439220 ~ 16442449 (+) True G64289
TU86778 other upstream 326430 16422234 ~ 16426613 (+) False arid2
TU86374 other upstream 2007961 14744735 ~ 14745082 (+) True G64015
TU85654 other upstream 3591723 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 4093525 12659448 ~ 12659518 (+) True trnag-gcc_1
TU86961 other downstream 79736 16833296 ~ 16864454 (+) False LOC103030423
TU86972 other downstream 110958 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other downstream 119527 16873087 ~ 16875941 (+) True G64449
TU87328 other downstream 936649 17690209 ~ 17719428 (+) False G64698
TU87714 other downstream 1866300 18619860 ~ 18623499 (+) True G64990

Expression Profile