RNA id: TU86961


Basic Information

Item Value
RNA id TU86961
length 440
RNA type TUCP
GC content 0.62
exon number 3
gene id LOC103030423
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16833290 ~ 16888195 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCATGACGCCACTTCCCCGCTAAAGGAGGCGCCGCAGCGCGCTAATGCAGACCGCCCGGCCGCCCTGCACAACCGGACCGCCGGCCTTCATTCCTCCGCTAGCAGCGCGCTGATCCGGGGGTTCGGGCTTTTTACCGGGAGCGAGGCGATACTGACCCGCGTGCAGAATGATGAAGAACGGGCACCATCAGGCGGGGAAGCCcggggaggacgcggaggcgagCCCGGTCGCGGTCGCCTGCAGCCCGGAGAAGAGGCGGAGGATCGTCCGCGTGTGGTGTGATGGATGctacGACATGGTGCATTATGGACATTCCAACCAGCTACGACAAGCCAAGGCTATGGGGGATTACCTTATTGTAGGAGTGCATACAGACGaagAGATCTCAAAGCACAAAGGCCCCCCGGTCTTCACACAGGCTGAGCGCTATAAGATGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86941 lncRNA upstream 51182 16727032 ~ 16782114 (+) True G64427
TU86909 lncRNA upstream 126200 16695940 ~ 16707096 (+) False G64403
TU86910 lncRNA upstream 126200 16701113 ~ 16707096 (+) True G64403
TU86895 lncRNA upstream 224083 16608857 ~ 16609213 (+) True G64393
TU86853 lncRNA upstream 300513 16491186 ~ 16532783 (+) True G64362
TU86987 lncRNA downstream 33096 16897550 ~ 16904677 (+) True G64462
TU87054 lncRNA downstream 88127 16952581 ~ 16952839 (+) True G64509
TU87056 lncRNA downstream 105082 16969536 ~ 16969896 (+) True G64511
TU87058 lncRNA downstream 139195 17003649 ~ 17003848 (+) True G64513
TU87061 lncRNA downstream 175513 17039967 ~ 17042012 (+) True G64515
XM_022671408.1 mRNA upstream 22066 16783913 ~ 16811230 (+) True LOC103035087
XM_022671407.1 mRNA upstream 22066 16784106 ~ 16811230 (+) False LOC103035087
XM_007241775.3 mRNA upstream 53611 16768410 ~ 16779685 (+) True LOC103041732
XM_022671406.1 mRNA upstream 68729 16717052 ~ 16764567 (+) True LOC103042039
XM_015602657.2 mRNA upstream 181638 16615571 ~ 16651658 (+) False LOC103026270
XM_022671177.1 mRNA downstream 444611 17309065 ~ 17556553 (+) True LOC111192909
XM_022671178.1 mRNA downstream 704345 17568799 ~ 17582128 (+) True LOC111192910
XM_022671443.1 mRNA downstream 825752 17690206 ~ 17702915 (+) True LOC111192975
XM_022671453.1 mRNA downstream 843516 17707970 ~ 17719858 (+) True LOC111192980
XM_022671428.1 mRNA downstream 867640 17732094 ~ 17745773 (+) True LOC107197389
TU86945 other upstream 79736 16753043 ~ 16753560 (+) True G64431
TU86763 other upstream 390847 16439220 ~ 16442449 (+) True G64289
TU86778 other upstream 406683 16422234 ~ 16426613 (+) False arid2
TU86374 other upstream 2088214 14744735 ~ 14745082 (+) True G64015
TU85654 other upstream 3671976 13156226 ~ 13161320 (+) False LOC111192955
TU86972 other downstream 64 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other downstream 8633 16873087 ~ 16875941 (+) True G64449
TU87328 other downstream 825755 17690209 ~ 17719428 (+) False G64698
TU87714 other downstream 1755406 18619860 ~ 18623499 (+) True G64990
TU87957 other downstream 2412348 19276802 ~ 19278815 (+) False LOC103044219

Expression Profile