RNA id: TU87056


Basic Information

Item Value
RNA id TU87056
length 361
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G64511
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16969536 ~ 16969896 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acagtagatacagaatcaccagcactgtaatctgttgtacccgtactgctctgtaattaatctacagttacagtagatacagaatcaccagcactgtaatctgttgtacccgtactgctctgtaattaatctacagttacagtagatacagaatcaccagcactgtaatctgttgtacccgtactgctctgtaattaatctacagttacagtagatacagaatcaccagcaccgtaatctgttgtacccgtactgctctgtaattaatctacagttacagtagatacagaatcaccagcaccgtaatctgttgtacccatactgctctgtaattaatctacagttacagtagatacagaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87054 lncRNA upstream 16697 16952581 ~ 16952839 (+) True G64509
TU86987 lncRNA upstream 64859 16897550 ~ 16904677 (+) True G64462
TU86941 lncRNA upstream 187422 16727032 ~ 16782114 (+) True G64427
TU86909 lncRNA upstream 262440 16695940 ~ 16707096 (+) False G64403
TU86910 lncRNA upstream 262440 16701113 ~ 16707096 (+) True G64403
TU87058 lncRNA downstream 33753 17003649 ~ 17003848 (+) True G64513
TU87061 lncRNA downstream 70071 17039967 ~ 17042012 (+) True G64515
TU87063 lncRNA downstream 72636 17042532 ~ 17045336 (+) True G64516
TU87088 lncRNA downstream 288482 17258378 ~ 17259319 (+) True G64539
TU87101 lncRNA downstream 361154 17331050 ~ 17332820 (+) False G64550
XM_022671409.1 mRNA upstream 86597 16833290 ~ 16882939 (+) False LOC103030423
XM_022671408.1 mRNA upstream 158306 16783913 ~ 16811230 (+) True LOC103035087
XM_022671407.1 mRNA upstream 158306 16784106 ~ 16811230 (+) False LOC103035087
XM_007241775.3 mRNA upstream 189851 16768410 ~ 16779685 (+) True LOC103041732
XM_022671406.1 mRNA upstream 204969 16717052 ~ 16764567 (+) True LOC103042039
XM_022671177.1 mRNA downstream 339169 17309065 ~ 17556553 (+) True LOC111192909
XM_022671178.1 mRNA downstream 598903 17568799 ~ 17582128 (+) True LOC111192910
XM_022671443.1 mRNA downstream 720310 17690206 ~ 17702915 (+) True LOC111192975
XM_022671453.1 mRNA downstream 738074 17707970 ~ 17719858 (+) True LOC111192980
XM_022671428.1 mRNA downstream 762198 17732094 ~ 17745773 (+) True LOC107197389
TU86972 other upstream 81341 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 93595 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 105082 16833296 ~ 16864454 (+) False LOC103030423
TU86945 other upstream 215976 16753043 ~ 16753560 (+) True G64431
TU86763 other upstream 527087 16439220 ~ 16442449 (+) True G64289
TU87328 other downstream 720313 17690209 ~ 17719428 (+) False G64698
TU87714 other downstream 1649964 18619860 ~ 18623499 (+) True G64990
TU87957 other downstream 2306906 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 2310404 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 2810767 19780663 ~ 19794279 (+) False LOC103037311

Expression Profile