RNA id: TU87088


Basic Information

Item Value
RNA id TU87088
length 212
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G64539
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17258378 ~ 17259319 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTCTCCCAGTCGTTTTTGAGGGAGTCGGCACTTTGATCCGACAGCTTCTTCAGCTCGACGATCTGCTTCTCTTTACTCTGCCGGATGACCTGGGACTCGCGCAGCAAGCTTTGAACTTTTTTTCTCCAGTGTCCTCACTGCCTCTTCAGCCTCCTTCTGTTTGGTTCGGTACATGCTCTTCAGCTCTGCTATTTCACCGTTCTTACGCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87063 lncRNA upstream 213042 17042532 ~ 17045336 (+) True G64516
TU87061 lncRNA upstream 216366 17039967 ~ 17042012 (+) True G64515
TU87058 lncRNA upstream 254530 17003649 ~ 17003848 (+) True G64513
TU87056 lncRNA upstream 288482 16969536 ~ 16969896 (+) True G64511
TU87054 lncRNA upstream 305539 16952581 ~ 16952839 (+) True G64509
TU87101 lncRNA downstream 71731 17331050 ~ 17332820 (+) False G64550
TU87102 lncRNA downstream 71731 17331050 ~ 17331529 (+) True G64550
TU87103 lncRNA downstream 71731 17331050 ~ 17332464 (+) False G64550
TU87108 lncRNA downstream 165184 17424503 ~ 17425146 (+) True G64555
TU87113 lncRNA downstream 186438 17445757 ~ 17446222 (+) True G64560
XM_022671409.1 mRNA upstream 375439 16833290 ~ 16882939 (+) False LOC103030423
XM_022671408.1 mRNA upstream 447148 16783913 ~ 16811230 (+) True LOC103035087
XM_022671407.1 mRNA upstream 447148 16784106 ~ 16811230 (+) False LOC103035087
XM_007241775.3 mRNA upstream 478693 16768410 ~ 16779685 (+) True LOC103041732
XM_022671406.1 mRNA upstream 493811 16717052 ~ 16764567 (+) True LOC103042039
XM_022671177.1 mRNA downstream 49746 17309065 ~ 17556553 (+) True LOC111192909
XM_022671178.1 mRNA downstream 309480 17568799 ~ 17582128 (+) True LOC111192910
XM_022671443.1 mRNA downstream 430887 17690206 ~ 17702915 (+) True LOC111192975
XM_022671453.1 mRNA downstream 448651 17707970 ~ 17719858 (+) True LOC111192980
XM_022671428.1 mRNA downstream 472775 17732094 ~ 17745773 (+) True LOC107197389
TU86972 other upstream 370183 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 382437 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 393924 16833296 ~ 16864454 (+) False LOC103030423
TU86945 other upstream 504818 16753043 ~ 16753560 (+) True G64431
TU86763 other upstream 815929 16439220 ~ 16442449 (+) True G64289
TU87328 other downstream 430890 17690209 ~ 17719428 (+) False G64698
TU87714 other downstream 1360541 18619860 ~ 18623499 (+) True G64990
TU87957 other downstream 2017483 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 2020981 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 2521344 19780663 ~ 19794279 (+) False LOC103037311

Expression Profile