RNA id: TU87170


Basic Information

Item Value
RNA id TU87170
length 515
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G64595
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17677928 ~ 17678442 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tagatagatagatagtgacaaaacattaataaaaaaacattaaaagagaaatggtgtgtccaaacttttgactggtgctgtataatattaaaattttaatttgcaGTTGCAGGAGAGATTGGCCTTATTACAATTAATCGACACAATCAAttaacactcaaataacacccAATTAACGGTCTCTACCTTAAAAAGTGTCCAAACAcaacatatttcatatttattcaataaataaatatcagaaaCTTAAACATAGGGATGCACGTAGATATAGatattatatctgtatataccgatatcattttttttttatcagaatcaTCGGCATTGGTCATTTTGGACAATATTTAAAACCAATAtttgttgatatttttttttttgtatgccaGAAAAGGTGCCAAGCGACGCTGACCACGCTACTACAATAGGTCAACACTGTCTGCACTGATTTAAAATCAAATGattcaaattaattttatttattttcatattttttcagtatatattttgtaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87161 lncRNA upstream 3767 17622861 ~ 17674161 (+) True G64586
TU87142 lncRNA upstream 55256 17565712 ~ 17622672 (+) True G64579
TU87156 lncRNA upstream 81799 17588922 ~ 17596129 (+) True G64583
TU87147 lncRNA upstream 112471 17562563 ~ 17565457 (+) True G64580
TU87135 lncRNA upstream 147635 17529946 ~ 17530293 (+) True G64574
TU87324 lncRNA downstream 11767 17690209 ~ 17715175 (+) False G64698
TU87329 lncRNA downstream 38476 17716918 ~ 17719912 (+) True G64698
TU87330 lncRNA downstream 39026 17717468 ~ 17719428 (+) False G64698
TU87358 lncRNA downstream 90805 17769247 ~ 17815728 (+) True G64710
TU87352 lncRNA downstream 102240 17780682 ~ 17812684 (+) True G64709
XM_022671178.1 mRNA upstream 95800 17568799 ~ 17582128 (+) True LOC111192910
XM_022671177.1 mRNA upstream 121375 17309065 ~ 17556553 (+) True LOC111192909
XM_022671409.1 mRNA upstream 794989 16833290 ~ 16882939 (+) False LOC103030423
XM_022671408.1 mRNA upstream 866698 16783913 ~ 16811230 (+) True LOC103035087
XM_022671443.1 mRNA downstream 11764 17690206 ~ 17702915 (+) True LOC111192975
XM_022671453.1 mRNA downstream 29528 17707970 ~ 17719858 (+) True LOC111192980
XM_022671428.1 mRNA downstream 53652 17732094 ~ 17745773 (+) True LOC107197389
XM_022671429.1 mRNA downstream 53652 17732094 ~ 17745773 (+) False LOC107197389
XM_022671434.1 mRNA downstream 70186 17748628 ~ 17764121 (+) True LOC111192970
TU86972 other upstream 789733 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 801987 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 813474 16833296 ~ 16864454 (+) False LOC103030423
TU86945 other upstream 924368 16753043 ~ 16753560 (+) True G64431
TU86763 other upstream 1235479 16439220 ~ 16442449 (+) True G64289
TU87328 other downstream 11767 17690209 ~ 17719428 (+) False G64698
TU87714 other downstream 941418 18619860 ~ 18623499 (+) True G64990
TU87957 other downstream 1598360 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 1601858 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 2102221 19780663 ~ 19794279 (+) False LOC103037311

Expression Profile