RNA id: TU87269


Basic Information

Item Value
RNA id TU87269
length 1777
RNA type TUCP
GC content 0.46
exon number 4
gene id LOC111192911
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17535296 ~ 17664561 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attatttttaatcGTATGACAGCACTTATTTATACCATATCCACCACCTCCCTAAATGAATCAGTTCTAAAATCTGcaggttttaatgtttaaatgctgagtgatgttgttttttgttgctgGTAAAACGTCCCTGGTTGTATTCCTCCTCCTGATCTGCTGTTCTGCTGACGGCGTGGAGTTATTCAGTCAGCAGTTCTGATGCAGTAATAATAGCTGATGCTGTCGGCTGATGGTGTTGCAGGAAGGTGGTGGTGGTAAAGGTGTGCTGAAGGTGTTTCAGTAGCAGGATGGCAGATTGTGATggtgtttatttaatatgtattgtgGTGTTGCAGGACAAGGAGCCGCGGGGGATCATTCCTCTGGAGAACCTCAGTATCCGAGAGGTGGAGGAGCCCAGGAAGCCGAACTGTTTTGAGCTCTATAACCCAAACCACAAGGGTCAGGTGATCAAGGCCTGTAAGACGGAGGCTGACGGGCGGGTGGTGGAGGGAAATCACGTGGTCTACAGGATATCAGCTCCAACAccggaggagaaggaggagtgGATCAAATCCATCAAAGCCAGCATCAGCAGGGACCCCTTCTACGACATGCTGGCAACCAGGAAGCGGCGCATCGCCAACAAGAAGTAGTGAGGGCACCACACCCCCCACCCGTGCCCAACCCTGTACCAGCGGCGTGACGGCACACGCACCGTACCTCCACCTAAACTCTACATACTGTACCTACTGCACACTGCCCTGCAGGAGCCGCCCACCTTTACCAGCCAGCGCACGTGAGCCGCGGCGGACTGATCGACGTGGGATACCGAAACTGTGCCACACAAGAGCTCACGTGACCCAAATCCTTACCAGTCTATCAAATGTACCCATTTTTACCCCCCTTTTTACCCTTTTTACCCACCCTGTTCCCCGTATTTCTGTATGTTACCCCGTCTTGTGTCGgggctggaaaaaaatgaacacaGCTGCCGTCGGTTGTTCTCTTTGCACTTGCATGGATGTCGTTTTGCAGACGTGGACGAAGTACTCACGTGAGATGCTGGAGGATACGCGCCGGGGGTCACTTTCACACTAGGTAAAACGCTGGTGAACCATGAAGAAACCATGGTAAACTGTGGTGAAACCTTGGAAAACTCTGGTAAACTTTGGAACACTATAGTTAACTGTGTTGAAACCTTGGTAAACTTTGGTAAAACTTTTCAAAACTGTGGGAAAATCTTGCCAAACTCTGATTAAACATGGTGAAACCTTGGTAAACTCTAGTTTTCTGTGGTGAAACATTGGTTAACCATGGTGAAACCTTAAAAAAACCATGGTGAAACATTGATAAACTCTGGTAAACTTTAGTAAACTGTGGTTAAACCCTCTAAAACCATGGTGAAACTCTAGTTTACTGTGGTGAAACCTTGGTTAACCACGGTGAAACATTGGTAAACTCTGGTAAACTTTGGTAAACTCTAGTTAATCATGGTGAAACCTTGGTAAACTCTGGTAAACTTTAGTGAAACTTTTCAAAACTATGGTAAAATCTTGCCAAACTCTGGTTAAACGTGGTGAAACCTTGGTAAACTCTGGTAAGCTTTGGTAAACTGCGGTTAAACCCTCCAAAACCATGGTGAAACTTTGGTTTCTCTTCAGTTAACTGTGGTGAAACCTCGATAAACCATGATGAAACCTTGGTAAACTCTAGTAAactttagtaaaactcttcaaAACTATGGGAAAATCTTGCCAAACTCTGGTTAACCATGGTGAAACATTGGTAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87293 lncRNA downstream 9524 17578797 ~ 17581592 (-) False G64682
TU87295 lncRNA downstream 9524 17579166 ~ 17581592 (-) False G64682
TU87298 lncRNA downstream 9524 17580422 ~ 17581592 (-) True G64682
TU87219 lncRNA downstream 417554 17172649 ~ 17173562 (-) True G64632
TU87209 lncRNA downstream 435069 17155606 ~ 17156047 (-) True G64622
TU87306 lncRNA upstream 9349 17606894 ~ 17670417 (-) True G64688
TU87318 lncRNA upstream 42615 17640160 ~ 17642229 (-) True G64694
TU87313 lncRNA upstream 79557 17677102 ~ 17678665 (-) True G64692
TU87315 lncRNA upstream 79557 17677102 ~ 17677681 (-) False G64692
TU87316 lncRNA upstream 80352 17677897 ~ 17678665 (-) False G64692
XM_022671176.1 mRNA downstream 284040 17103295 ~ 17307076 (-) True cep112
XM_022671415.1 mRNA downstream 494291 17046363 ~ 17096825 (-) False LOC103042974
XM_022671413.1 mRNA downstream 506635 17046363 ~ 17084481 (-) False LOC103042974
XM_022671414.1 mRNA downstream 506635 17046363 ~ 17084481 (-) True LOC103042974
XM_022671416.1 mRNA downstream 511896 17045514 ~ 17079220 (-) False LOC103042974
XM_022671452.1 mRNA upstream 84722 17682267 ~ 17689312 (-) False LOC103043390
XM_022671180.1 mRNA upstream 123584 17721129 ~ 17731699 (-) True stk19
XM_022671442.1 mRNA upstream 185207 17782752 ~ 17797809 (-) True LOC111192974
XM_022671421.1 mRNA upstream 209529 17807074 ~ 17817082 (-) True LOC111192966
XM_022671424.1 mRNA upstream 242634 17840179 ~ 17855162 (-) True ush1g
TU87029 other downstream 703213 16882335 ~ 16887903 (-) False G64492
TU87032 other downstream 703213 16882335 ~ 16887903 (-) True G64492
TU87035 other downstream 703213 16882335 ~ 16887903 (-) False G64492
TU87037 other downstream 703213 16883331 ~ 16887903 (-) False G64492
TU86884 other downstream 1005469 16585065 ~ 16585647 (-) True G64387
TU87588 other upstream 330962 17928507 ~ 17931170 (-) True G64886
TU87843 other upstream 1045826 18643371 ~ 18650343 (-) False LOC111192971
TU88001 other upstream 1300640 18898185 ~ 18919522 (-) False G65184
TU88002 other upstream 1300640 18898185 ~ 19023658 (-) True G65184
TU88053 other upstream 1682757 19280302 ~ 19284032 (-) True G65231

Expression Profile