RNA id: XM_022671179.1


Basic Information

Item Value
RNA id XM_022671179.1
length 2178
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC111192911
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17535296 ~ 17664561 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGTGGGTGGGGTAAGAAATGGAGCTGGATGGTGTGGTGGAGATGTGGATCCAGATGCAGGCTGTAGAGCCGCTGTATGAACCGGACGCGCTGCTTTAAACGACACGCGGCGAcgccgtccgtccgtccgtctgtCCATCCGTCGGGAGTCGGGAATCGTCTTGGTGATGTGGAATAAGCGGTAATCGTGGAATCGTGGAGAAATCTTGGGGAAAACCAGGGAAAAGGCAGGACGcggactgtctctctgtctgagcGAGCTGTCTATCGCTAAATGCATAAATGCAGCCATCAACGTGAAAAGCCGTCACTGCGATAAACAGCGACATACACATGAACTAGCGCTATATCGATCACATCGCTTATTGATTACCGCGTCTCGAGGATTTTCCTAAAGGCTGATCAGAAAACATGGACGAAGACAATCATGTACCGGAGGATCTGTCCTTAGATGAGAGGGATGAGCTGACGAACATACGACGCAGGAAAAAAGAGCTGTTGGATGATATTGAGCGGTTGAAGTACGAGATCGCGGAGGTGATGACGGAGATCGAGCAGCTCACCTGCGTGGGCGAGAGCAAAACcacacagagaaacaaacagatCGCCATGGGAAGAAAGAAATTCAACATGGATCCCAAAAAGGGAATCCagttcctgctggaaaatgatcTCCTGCAGCACACCCCTGAAGATATCGCTCAGTTCCTCTATAAAGGAGAGGGTCTGAATAAAACTGTCATTGGCGATTACCTGGGagaaagggaTGACTTCAATATTAAAGTTCTCCAGGCCTTTGTGGAGCTCCATgaattttcagacctcaatCTTGTTCAGGCATTAAGGCAGTTCCTCTGGAGCTTCAGGCTGCCGGGCGAGGCGCAGAAGATTGATCGAATGATGGAAGCGTTCGCGTCTCGGTACTGCCAGTGCAACCCAGGGGTCTTCCAATCCACAGACACGTGTTACGTCCTCTCCTTCGCCATCATCATGCTGAACACCAGCCTCCACAACCCCAACGTCAGAGACAAACCCGCCGTGGAGCGCTTCATCTCCATGAACAGAGGAATCAACGAGGGAGGAGACCTGCCCGAGGAGCTGCTCAGGGACTGTGAGTTTTCTCAGACGGTGGGTGGTGACAGTGAAAGCTGTGGAAACACCACCATCACTCACACTCTGATTAATGTGTCTACAGCTAGCAGGATGGCAGATTGTGATggtgtttatttaatatgtattgtgGTGTTGCAGGACAAGGAGCCGCGGGGGATCATTCCTCTGGAGAACCTCAGTATCCGAGAGGTGGAGGAGCCCAGGAAGCCGAACTGTTTTGAGCTCTATAACCCAAACCACAAGGGTCAGGTGATCAAGGCCTGTAAGACGGAGGCTGACGGGCGGGTGGTGGAGGGAAATCACGTGGTCTACAGGATATCAGCTCCAACAccggaggagaaggaggagtgGATCAAATCCATCAAAGCCAGCATCAGCAGGGACCCCTTCTACGACATGCTGGCAACCAGGAAGCGGCGCATCGCCAACAAGAAGTAGTGAGGGCACCACACCCCCCACCCGTGCCCAACCCTGTACCAGCGGCGTGACGGCACACGCACCGTACCTCCACCTAAACTCTACATACTGTACCTACTGCACACTGCCCTGCAGGAGCCGCCCACCTTTACCAGCCAGCGCACGTGAGCCGCGGCGGACTGATCGACGTGGGATACCGAAACTGTGCCACACAAGAGCTCACGTGACCCAAATCCTTACCAGTCTATCAAATGTACCCATTTTTACCCCCCTTTTTACCCTTTTTACCCACCCTGTTCCCCGTATTTCTGTATGTTACCCCGTCTTGTGTCGgggctggaaaaaaatgaacacaGCTGCCGTCGGTTGTTCTCTTTGCACTTGCATGGATGTCGTTTTGCAGACGTGGACGAAGTACTCACGTGAGATGCTGGAGGATACGCGCCGGGGGTCACTTTCACACTAGGTAAAACGCTGGTGAACCATGAAGAAACCATGGTAAACTGTGGTGAAACCTTGGAAAACTCTGGTAAACTTTGGAACACTATAGTTAACTGTGTTGAAACCTTGGTAAACTTTGGTAAAACTTTTCAAAACTGTGGGAAAATCTTGCCAAACTCTGATTAAACATGGTGAAACCTTGGTAAA

Function

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0032012 regulation of ARF protein signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87293 lncRNA downstream 10109 17578797 ~ 17581592 (-) False G64682
TU87295 lncRNA downstream 10109 17579166 ~ 17581592 (-) False G64682
TU87298 lncRNA downstream 10109 17580422 ~ 17581592 (-) True G64682
TU87219 lncRNA downstream 418139 17172649 ~ 17173562 (-) True G64632
TU87209 lncRNA downstream 435654 17155606 ~ 17156047 (-) True G64622
TU87313 lncRNA upstream 12541 17677102 ~ 17678665 (-) True G64692
TU87315 lncRNA upstream 12541 17677102 ~ 17677681 (-) False G64692
TU87316 lncRNA upstream 13336 17677897 ~ 17678665 (-) False G64692
TU87312 lncRNA upstream 14253 17678814 ~ 17689287 (-) True LOC103043390
TU87520 lncRNA upstream 25668 17690229 ~ 17719911 (-) True G64835
XM_022671176.1 mRNA downstream 284625 17103295 ~ 17307076 (-) True cep112
XM_022671415.1 mRNA downstream 494876 17046363 ~ 17096825 (-) False LOC103042974
XM_022671413.1 mRNA downstream 507220 17046363 ~ 17084481 (-) False LOC103042974
XM_022671414.1 mRNA downstream 507220 17046363 ~ 17084481 (-) True LOC103042974
XM_022671416.1 mRNA downstream 512481 17045514 ~ 17079220 (-) False LOC103042974
XM_022671452.1 mRNA upstream 17706 17682267 ~ 17689312 (-) False LOC103043390
XM_022671180.1 mRNA upstream 56568 17721129 ~ 17731699 (-) True stk19
XM_022671442.1 mRNA upstream 118191 17782752 ~ 17797809 (-) True LOC111192974
XM_022671421.1 mRNA upstream 142513 17807074 ~ 17817082 (-) True LOC111192966
XM_022671424.1 mRNA upstream 175618 17840179 ~ 17855162 (-) True ush1g
TU87029 other downstream 703798 16882335 ~ 16887903 (-) False G64492
TU87032 other downstream 703798 16882335 ~ 16887903 (-) True G64492
TU87035 other downstream 703798 16882335 ~ 16887903 (-) False G64492
TU87037 other downstream 703798 16883331 ~ 16887903 (-) False G64492
TU86884 other downstream 1006054 16585065 ~ 16585647 (-) True G64387
TU87588 other upstream 263946 17928507 ~ 17931170 (-) True G64886
TU87843 other upstream 978810 18643371 ~ 18650343 (-) False LOC111192971
TU88001 other upstream 1233624 18898185 ~ 18919522 (-) False G65184
TU88002 other upstream 1233624 18898185 ~ 19023658 (-) True G65184
TU88053 other upstream 1615741 19280302 ~ 19284032 (-) True G65231

Expression Profile