RNA id: TU87298


Basic Information

Item Value
RNA id TU87298
length 532
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id G64682
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17578797 ~ 17581592 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

catcAGCATCCACACAATCATCAGCATCCTTAGCATCTTCAGCATCAGCATCCACACATCATCCACaacatcatccacagcatcctcatcatcttcagcatcctcatcatcatccacagcatcctcagcatcatcagcatcctcagcatcatccacagcatcctcagcatcatcctcatcatcatccacagcatcctcatcatcatcctcatcatcatcctcagcatcatctacagcatcctcagcatcatcctcatcatcatccactgcatcctcagcatcatccacagcatcctcatcatcatccacagcatcctcatcatcatccacAGCATTCTCAGCTTCACCACTGCATCCTCagcatcatcctcatcatcatcctcagcatcatcctcatcatcaacCTCAGCATCATCCTCAGTATCATCcacagcatcctcagcatcatcctcatcatcatccacagcatcctcagcatcatcctcatcatcatccactgcatcctcagcatcatcctctgcatcctcagcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87219 lncRNA downstream 406860 17172649 ~ 17173562 (-) True G64632
TU87209 lncRNA downstream 424375 17155606 ~ 17156047 (-) True G64622
TU87206 lncRNA downstream 434755 17145278 ~ 17145667 (-) True G64619
XR_002650194.1 lncRNA downstream 538351 17039842 ~ 17042071 (-) True LOC111192963
TU87055 lncRNA downstream 627552 16952588 ~ 16952870 (-) True G64510
TU87306 lncRNA upstream 25302 17606894 ~ 17670417 (-) True G64688
TU87318 lncRNA upstream 58568 17640160 ~ 17642229 (-) True G64694
TU87313 lncRNA upstream 95510 17677102 ~ 17678665 (-) True G64692
TU87315 lncRNA upstream 95510 17677102 ~ 17677681 (-) False G64692
TU87316 lncRNA upstream 96305 17677897 ~ 17678665 (-) False G64692
XM_022671176.1 mRNA downstream 273346 17103295 ~ 17307076 (-) True cep112
XM_022671415.1 mRNA downstream 483597 17046363 ~ 17096825 (-) False LOC103042974
XM_022671413.1 mRNA downstream 495941 17046363 ~ 17084481 (-) False LOC103042974
XM_022671414.1 mRNA downstream 495941 17046363 ~ 17084481 (-) True LOC103042974
XM_022671416.1 mRNA downstream 501202 17045514 ~ 17079220 (-) False LOC103042974
XM_022671179.1 mRNA upstream 10109 17591701 ~ 17664561 (-) False LOC111192911
XM_022671452.1 mRNA upstream 100675 17682267 ~ 17689312 (-) False LOC103043390
XM_022671180.1 mRNA upstream 139537 17721129 ~ 17731699 (-) True stk19
XM_022671442.1 mRNA upstream 201160 17782752 ~ 17797809 (-) True LOC111192974
XM_022671421.1 mRNA upstream 225482 17807074 ~ 17817082 (-) True LOC111192966
TU87029 other downstream 692519 16882335 ~ 16887903 (-) False G64492
TU87032 other downstream 692519 16882335 ~ 16887903 (-) True G64492
TU87035 other downstream 692519 16882335 ~ 16887903 (-) False G64492
TU87037 other downstream 692519 16883331 ~ 16887903 (-) False G64492
TU86884 other downstream 994775 16585065 ~ 16585647 (-) True G64387
TU87264 other upstream 5253 17586845 ~ 17597545 (-) False LOC111192911
TU87266 other upstream 5253 17586845 ~ 17597545 (-) False LOC111192911
TU87272 other upstream 5253 17586845 ~ 17597545 (-) True LOC111192911
TU87274 other upstream 5253 17586845 ~ 17597545 (-) False LOC111192911
TU87275 other upstream 5253 17586845 ~ 17597545 (-) False LOC111192911

Expression Profile