RNA id: TU87306


Basic Information

Item Value
RNA id TU87306
length 562
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G64688
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17606894 ~ 17670417 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtttttttcatacgtcctctgagaaaattacaggctgaattatctactgtttttctctgaactccgtgctcctccggtaattttagtcccgtccggacgcacatctctgagtttcgtctcctcgcctttaataaaatagctatttgtccactgccgcgcaccgtaattaagTTTTGGCCTcgcatttccacagagatccacgttaaaaacacaaaagcgagtggaaatggaggagctactgaactctactgatgatgtcacgtgaccgagaaaagtagcctaaaaactcactgatcctcctgtttttacaatttgtagtccggatgcaggactgagtagaagtgtgagatattttttacagacgaACCCCTGAGATACTAATCCCGTCCTAATAGAGCTTTTGCTATCGTAaagatgggaaaagtacacaagTCACAAAAGTCAaatactaattatcttaattaatcatgggtgtggttaattttgggcataatgtgaaataaaccaatcagagtgtctcttgctcatcattcccttgcccttgcctggctagcactgctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87293 lncRNA downstream 25302 17578797 ~ 17581592 (-) False G64682
TU87295 lncRNA downstream 25302 17579166 ~ 17581592 (-) False G64682
TU87298 lncRNA downstream 25302 17580422 ~ 17581592 (-) True G64682
TU87219 lncRNA downstream 433332 17172649 ~ 17173562 (-) True G64632
TU87209 lncRNA downstream 450847 17155606 ~ 17156047 (-) True G64622
TU87313 lncRNA upstream 6685 17677102 ~ 17678665 (-) True G64692
TU87315 lncRNA upstream 6685 17677102 ~ 17677681 (-) False G64692
TU87316 lncRNA upstream 7480 17677897 ~ 17678665 (-) False G64692
TU87312 lncRNA upstream 8397 17678814 ~ 17689287 (-) True LOC103043390
TU87520 lncRNA upstream 19812 17690229 ~ 17719911 (-) True G64835
XM_022671176.1 mRNA downstream 299818 17103295 ~ 17307076 (-) True cep112
XM_022671415.1 mRNA downstream 510069 17046363 ~ 17096825 (-) False LOC103042974
XM_022671413.1 mRNA downstream 522413 17046363 ~ 17084481 (-) False LOC103042974
XM_022671414.1 mRNA downstream 522413 17046363 ~ 17084481 (-) True LOC103042974
XM_022671416.1 mRNA downstream 527674 17045514 ~ 17079220 (-) False LOC103042974
XM_022671452.1 mRNA upstream 11850 17682267 ~ 17689312 (-) False LOC103043390
XM_022671180.1 mRNA upstream 50712 17721129 ~ 17731699 (-) True stk19
XM_022671442.1 mRNA upstream 112335 17782752 ~ 17797809 (-) True LOC111192974
XM_022671421.1 mRNA upstream 136657 17807074 ~ 17817082 (-) True LOC111192966
XM_022671424.1 mRNA upstream 169762 17840179 ~ 17855162 (-) True ush1g
TU87262 other downstream 9349 17535296 ~ 17597545 (-) False LOC111192911
TU87264 other downstream 9349 17586845 ~ 17597545 (-) False LOC111192911
TU87266 other downstream 9349 17586845 ~ 17597545 (-) False LOC111192911
TU87272 other downstream 9349 17586845 ~ 17597545 (-) True LOC111192911
TU87274 other downstream 9349 17586845 ~ 17597545 (-) False LOC111192911
TU87588 other upstream 258090 17928507 ~ 17931170 (-) True G64886
TU87843 other upstream 972954 18643371 ~ 18650343 (-) False LOC111192971
TU88001 other upstream 1227768 18898185 ~ 18919522 (-) False G65184
TU88002 other upstream 1227768 18898185 ~ 19023658 (-) True G65184
TU88053 other upstream 1609885 19280302 ~ 19284032 (-) True G65231

Expression Profile