RNA id: TU87312



Basic Information


Item Value
RNA id TU87312
length 4519
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC103043390
representative True

Chromosome Information


Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17678814 ~ 17689312 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CGGAGTATGAGTGCGGCCGGGCTGCGGTATCGGTTCGAGGTTAAGCCCGGTACAGAACCATGCTGACCCGGCGCGGGAGAGCGGGCCTGTCGGGGCGGGGAGCTGGGCTGTGAGCCGCGGTTCTGATGGCGGGACTGTCGTACCTGGTGCTGCGGTTCTCGGGCTCCGCGGGCCGAACCTACGGACTGTTCTCTAAAGGACTCACCCGAACCCTGCTCATATTCTTCGACCTGGCCTGGAGGCTCCGGATCCGGTTCCCCTACCTCTACCTCATCGCCTCTATGATGTTTAATGTTCGCCTGCAGGTTCACATCGAGATACATTAATATGCGCCGACGGACTTCCATCACTGACAGAATGGCCAATCGCTGCTTTAGACCCCGTCCGAGGTGAAAAGGTTCAGCAGCTCTGGGAGATAAACGTATGGAggaaacagatacagagaggATGGAGCCGCCGCCTCCGTCGCTCTGCTTCACAGCAGATCTGGATCCTGACCTGAGATCAGCGTCTGCAGAGCGTCGCCATGtttctgctgctgatgatgttgatgatgtttGTTGGGACTTCGGCGGCTTTCGGCGTGAAAGCTTCGCTCTGTGGACCGAGTGCGATGGCCGAAGGTGATGGAAACCATATTCAGGGTGTTCTTAatcttaaaaaatctaaaaaactaaaaatatcctGTTTTTCTGGAATTATTTGGACTTTCTGCTCATTTCTAACAGCAGAAGTGACCAACTAGAGCCTTGATGTTTATAGAATTTTAAGGGGATGGGTTCATAGACGTTTCTAAATAGGTCCTGTATGActttggctacgttcacacatCAGGTAAATCCAAGGGCCCAAATCTTTATGGCTGTTcgttttggggggaaaaaagaaaggggGCACTTcggtttctgaaccagtttctctgaatttgctatttataggtttatgtttaagtaaaattaacattattgtttgACTCATATTTGTAATgatttaggagttcagaaataatcaatatttggtggaataaccttggtttttaatcacagtttttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattcctctagatttttatgtggttttcctttttttcaaacAATAGCGTTAATGTAGAATATTATAGTTAAATTCCTTTACATAATACAGAAATTCAGTAAGATTAATTCAGCTTCAAGTCTCAACCACGCTTGAtgtacagctttgaaaaaaaaattgagagcacacagtttctgaatcagttcctctgattttgctatttctcccaaattgcaaaacaaaaaaatcgttcattcattcatttagagcatttatttgcagaaaatgaaaaatggcgaAATAGCGAAAGTGTGTACGCAAAGTCtgattctgacagagagctaGAATTATAAACTAAAATTTCACAAacgatttattaatttattaagtaaaaagagactccgcccacatagaCGATGTCGACAGGATGTAGGATGAAGTTGCTGAATGTGCTCAGTCACTAAACTAcagtgtgaaaccgaaactaaacGTGACAAAGACCTTGGTGAACCTTGGTGCAAACTATAGTCTGGACTggtcaggtgtgaaaacgcccttattTTATTGGAACAGAGACATAAAACTTAATATTTATGGCCTCTGTCAACCCTTATTCATAGCTATTGTGCTTTATATCATCACTTACTCACAGCCTTTTTAACTTAAAAGTTGAAAAATTCTAATTTCGCTGTTCAGACTGATTCACAATAGAGCTGCACGATACTGGaaaaatttacattgcaaatgttctttttttcgattatatatatatatatatatatatatatatagcaatattaaacagtgcagggctcatgacgtcaccagccccacccccacccacgCACTACCTGTCTCGCATCTGggccaatcaagagctgagtcagcggcGAGTTCTCAAAACCCGAgataaacagcaaaacaacagtaatcagccctttaatcaggcatttgaATGCTtgtaaaaggtaaataagattaagaataagtttttctgggattaaaagcgtgaattcagctgtaactggaaatatctgcactgctaaactgtgctggactgaggagcacagctttccacacgtgattacgtttacaagcacgtgcccaaccatgtggatggaggccatgcttGTGGTTACGTTGTGTTTATTACTGCCCCTCCCcctcgtgcttctcaggcagcagcagcctgtcactcacacagacacagagacagcgctgtgtatctacttctagtgttgcttaaacgatatatcatgcagccctaattcACAATGTTCACAAGTCAGATAAGTATCAGAATTTAATGTATACACacatattaaatagaaaatatcaaattcagtgtatttttacTGTTACTCTGCCGCTCAGATAACAGATCTGTATCACATATGAtgtaaaatatcagattttttgccACATTTACCTGCTGAGTGAACGTAGCTCTGAGAACAGACTGCCTCTTACAGAGCGTTACAGTGAGGTTCGTCAGTGTTGAGATGTTCACAAACTCATATTTATCTTGATTTGTTAAAGTTTTACGGGGAGTTTTACGTTGTTTGGACATGTAGCAGATGAATAATCTCACGTTTCATGTTTACTGGAGGTCAAATAACCCGCGTtactgaggaagaggaggggcTGTGTTGTTTTATATCTCCTAATATATAGCGCTTTATCAAGGGATGTGGTTTtccatacataaatacatacttatatacacacagacacacacacaatcacaacatGTTTAATCAAAATCACATGAGTGGGATTTCTTAGGTTACCGGTACATTCACACCGCAGGTAAAAACAGCCGAAATctgaattttttatttctctgtttgttagcctgtttacactgtgttttaatgtgatttatatcCAAAATTGGTctaagaaacagtttgtgctcaTGTATTAGAGAGCagcgcttcacgtgaagtttcggtttcatcttctcTAGTCTTACAGGATGTATTAAAGCAGTTCCTGTGTCTGCAGTAGGCTTATTATCATCGAAAATGCATttaagctcactgtaaaaaggacattatattatttagtttagccacacccactactttagtttatgttcttgtTTCAGGCTGTTTTTTATCATGCCAGTGCCATGTTTAGctatttttccttttcatttgACATAAATCACATTAACATTAATTCTTATCTGACTGTTTAGACTTATAAATTCACAGAGGTCTAAGGTGttgtcactatgatcaggaactcgctggttcgaatcctgttcattcagcttgccatcagctgccagagccctgagagagcacaggcgctcttctttcccctcatcactcctagggtgatgtggatcagcacaaggctgcatctgtgagctgatgtatcagaaccgagtcgctgcgctttcttccgagcgttagcgctgtgatgctactcggcaatgctacatcagcagcagttcagaaagaagtggagtctgacttcacatgtatcagaggaggcatgtgctggttttcaccctcctggtgtgttggggcatcactagtgatagggggagtgtcctaatgagtgggttgggtgattggccgtgtaaattggggagaaaatgggaaaataaattagaaaagaaaaaaaaatcacaaaaacacaataactaAACCGATCAGATTTGGGCcgattttacctgctgtgtttttgggAGTTTATGGCTAGTTTTgtcattttacttatttatatttagaatcACATTTAAAAGTACTGAATTTTGGTACATGCATGtagtttaatttttctttttttccgtACACATGGGTTCAGGTTAAAAGTTATATAATCCCTGCTGTTAcaccaaaaaataagaaagtaaattaaaactgactcatgtttgagctaaagggctgttcaggtgcagtttaatctgatttattacccagataataaTTACTAACTACAGCTATTAACTAATGCAGCTCTGCTGTATGTTCAGTACATGCTAGAACACAGCATGTTAGAccctcttcctgtatttactatattactgtatttattctaGCTAAtccccagacagctctgaccaatcagaggagactacCTGCTCGTGTGGATTTTAGGGCTCATATTGGTGCTTTTAGGTTTTaggtgcctgtgtgaaaacaaaccaaacagaggggaAAACTCACCAAGAAAACGAAGTCATGAACTGATTAAGACCAGAGAAACCGAATACAGGTGTAAAAACTCTCCTTAATCACCTCTAAAATTTCATGTTTCCTCAAGGTCATGGTATGGGACAATAATGCTATAAAttatattgaattattattatttatattttttaagaatgc

Function


GO:

id name namespace
GO:0046530 photoreceptor cell differentiation biological_process
GO:0042461 photoreceptor cell development biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87313 lncRNA downstream 149 17677102 ~ 17678665 (-) True G64692
TU87316 lncRNA downstream 149 17677897 ~ 17678665 (-) False G64692
TU87315 lncRNA downstream 1133 17677102 ~ 17677681 (-) False G64692
TU87306 lncRNA downstream 8397 17606894 ~ 17670417 (-) True G64688
TU87318 lncRNA downstream 36585 17640160 ~ 17642229 (-) True G64694
TU87520 lncRNA upstream 942 17690229 ~ 17719911 (-) True G64835
TU87521 lncRNA upstream 9819 17699106 ~ 17719911 (-) False G64835
TU87528 lncRNA upstream 18709 17707996 ~ 17715442 (-) True G64841
TU87545 lncRNA upstream 79960 17769247 ~ 17815728 (-) True G64857
TU87563 lncRNA upstream 121889 17811176 ~ 17953544 (-) True G64867
XM_022671179.1 mRNA downstream 14253 17591701 ~ 17664561 (-) False LOC111192911
XM_022671176.1 mRNA downstream 371738 17103295 ~ 17307076 (-) True cep112
XM_022671415.1 mRNA downstream 581989 17046363 ~ 17096825 (-) False LOC103042974
XM_022671180.1 mRNA upstream 31842 17721129 ~ 17731699 (-) True stk19
XM_022671442.1 mRNA upstream 93465 17782752 ~ 17797809 (-) True LOC111192974
XM_022671421.1 mRNA upstream 117787 17807074 ~ 17817082 (-) True LOC111192966
XM_022671424.1 mRNA upstream 150892 17840179 ~ 17855162 (-) True ush1g
XM_022671425.1 mRNA upstream 152689 17841976 ~ 17855162 (-) False ush1g
TU87272 other downstream 81269 17586845 ~ 17597545 (-) True LOC111192911
TU87588 other upstream 239220 17928507 ~ 17931170 (-) True G64886
TU87843 other upstream 954084 18643371 ~ 18650343 (-) False LOC111192971
TU88001 other upstream 1208898 18898185 ~ 18919522 (-) False G65184
TU88002 other upstream 1208898 18898185 ~ 19023658 (-) True G65184
TU88053 other upstream 1591015 19280302 ~ 19284032 (-) True G65231

Expression Profile