RNA id: XM_022671452.1



Basic Information


Item Value
RNA id XM_022671452.1
length 1091
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC103043390
representative False

Chromosome Information


Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17678814 ~ 17689312 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CCGGTGGGGAACAGTGACAGCGGGGCGGAGTATGAGTGCGGCCGGGCTGCGGTATCGGTTCGAGGTTAAGCCCGGTACAGAACCATGCTGACCCGGCGCGGGAGAGCGGGCCTGTCGGGGCGGGGAGCTGGGCTGTGAGCCGCGGTTCTGATGGCGGGACTGTCGTACCTGGTGCTGCGGTTCTCGGGCTCCGCGGGCCGAACCTACGGACTGTTCTCTAAAGGACTCACCCGAACCCTGCTCATATTCTTCGACCTGGCCTGGAGGCTCCGGATCCGGTTCCCCTACCTCTACCTCATCGCCTCTATGATGTTTAATGTTCGCCTGCAGGTTCACATCGAGATACATTAATATGCGCCGACGGACTTCCATCACTGACAGAATGGCCAATCGCTGCTTTAGACCCCGTCCGAGGTGAAAAGGTTCAGCAGCTCTGGGAGATAAACGTATGGAggaaacagatacagagaggATGGAGCCGCCGCCTCCGTCGCTCTGCTTCACAGCAGATCTGGATCCTGACCTGAGATCAGCGTCTGCAGAGCGTCGCCATGtttctgctgctgatgatgttgatgatgtttGTTGGGACTTCGGCGGCTTTCGGCGTGAAAGCTTCGCTCTGTGGACCGAGTGCGATGGCCGAAGGTGATGGAAACCATATTCAGGGTGTTCTTAatcttaaaaaatctaaaaaactaaaaatatcctGTTTTTCTGGAATTATTTGGACTTTCTGCTCATTTCTAACAGCAGAAGTGACCAACTAGAGCCTTGATGTTTATAGAATTTTAAGGGGATGGGTTCATAGACGTTTCTAAATAGGTCCTGTATGActttggctacgttcacacatCAGGTAAATCCAAGGGCCCAAATCTTTATGGCTGTTcgttttggggggaaaaaagaaaggggGCACTTcggtttctgaaccagtttctctgaatttgctatttataggtttatgtttaagtaaaattaacattattgtttgACTCATATTTGTAATgatttaggagttcagaaataatcaatatttggtggaataaccttggtttttaatcacagtttttttcatgcatcttggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87313 lncRNA downstream 3602 17677102 ~ 17678665 (-) True G64692
TU87316 lncRNA downstream 3602 17677897 ~ 17678665 (-) False G64692
TU87315 lncRNA downstream 4586 17677102 ~ 17677681 (-) False G64692
TU87306 lncRNA downstream 11850 17606894 ~ 17670417 (-) True G64688
TU87318 lncRNA downstream 40038 17640160 ~ 17642229 (-) True G64694
TU87520 lncRNA upstream 917 17690229 ~ 17719911 (-) True G64835
TU87521 lncRNA upstream 9794 17699106 ~ 17719911 (-) False G64835
TU87528 lncRNA upstream 18684 17707996 ~ 17715442 (-) True G64841
TU87545 lncRNA upstream 79935 17769247 ~ 17815728 (-) True G64857
TU87563 lncRNA upstream 121864 17811176 ~ 17953544 (-) True G64867
XM_022671179.1 mRNA downstream 17706 17591701 ~ 17664561 (-) False LOC111192911
XM_022671176.1 mRNA downstream 375191 17103295 ~ 17307076 (-) True cep112
XM_022671415.1 mRNA downstream 585442 17046363 ~ 17096825 (-) False LOC103042974
XM_022671413.1 mRNA downstream 597786 17046363 ~ 17084481 (-) False LOC103042974
XM_022671414.1 mRNA downstream 597786 17046363 ~ 17084481 (-) True LOC103042974
XM_022671180.1 mRNA upstream 31817 17721129 ~ 17731699 (-) True stk19
XM_022671442.1 mRNA upstream 93440 17782752 ~ 17797809 (-) True LOC111192974
XM_022671421.1 mRNA upstream 117762 17807074 ~ 17817082 (-) True LOC111192966
XM_022671424.1 mRNA upstream 150867 17840179 ~ 17855162 (-) True ush1g
XM_022671425.1 mRNA upstream 152664 17841976 ~ 17855162 (-) False ush1g
TU87262 other downstream 84722 17535296 ~ 17597545 (-) False LOC111192911
TU87264 other downstream 84722 17586845 ~ 17597545 (-) False LOC111192911
TU87266 other downstream 84722 17586845 ~ 17597545 (-) False LOC111192911
TU87272 other downstream 84722 17586845 ~ 17597545 (-) True LOC111192911
TU87274 other downstream 84722 17586845 ~ 17597545 (-) False LOC111192911
TU87588 other upstream 239195 17928507 ~ 17931170 (-) True G64886
TU87843 other upstream 954059 18643371 ~ 18650343 (-) False LOC111192971
TU88001 other upstream 1208873 18898185 ~ 18919522 (-) False G65184
TU88002 other upstream 1208873 18898185 ~ 19023658 (-) True G65184
TU88053 other upstream 1590990 19280302 ~ 19284032 (-) True G65231

Expression Profile