RNA id: TU87313


Basic Information

Item Value
RNA id TU87313
length 1564
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G64692
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17677102 ~ 17678665 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCATATGCGGTAGTCACATTGCAAAtaaggctgcaactaatgattattttggtagttaaATCAATGATCTGttgattatttcttttattagctgATAACCAATGccaatatacatatttataacttaCACAGAGCTTATAAATTTATAAACTAATTTAAGTTCAAATTTAATGTAGGTTTCAAAATTagcctttaaaaataaaaataaaaaataattcaataatttacaaaatatatactgaaaaaatatgaaaataaataaaattaatttgaatCATTTGATTTTAAATCAGTGCAGACAGTGTTGACCTATTGTAGTAGCGTGGTCAGCGTCGCTTGGCACCTTTTCtggcatacaaaaaaaaaaatatcaacaaaTATTGGTTTTAAATATTGTCCAAAATGACCAATGCCGAtgattctgataaaaaaaaaatgatatcggtatatacagatataatatCTATATCTACGTGCATCCCTATGTTTAAGtttctgatatttatttattgaataaatatgaaatatgttgTGTTTGGACACTTTTTAAGGTAGAGACCGTTAATTgggtgttatttgagtgttaaTTGATTGTGTCGATTAATTGTAATAAGGCCAATCTCTCCTGCAACtgcaaattaaaattttaatattatacagcaccagtcaaaagtttggacacaccatttctcttttaatgtttttttattaatgttttgtcactatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctagatgaGTTCTAGTGGTTTTGAGCTTTTGCTCacaggtttttataataaaaataaagaatggatattaataaaaatgtgtttctaaacttttgattggtattgtatatatttttgttgcttAAATTCCCATGACTTTTCTTTTCCAtgacttatatattatatatcattatatattattaactgcccactatatatatttattttattccaataCTACAGTCCAGGTTTTGCATTAACAATATCATGAGATGTTGGTTTGCTTACATATGgggaattttttatttatgttttaattctgtatttttttttatattgcaatgTAAAttgcagaaaacaaaaatgttgcgATGCTGATTTTTTACCCCCCACAGTTTTGTGCAGCCCTGTGGAGACCTGTCTAGTGCACTATATACAGCGTAGGGAACCATTTGGGACGCagccttttatattttttgtttttttagtttcatCCCGTCCGCAACTGTCCCCGTTCTTTTGCAGCACAGTGAACATTGTTActttaaaattgatttttacttttaaaactgGAGTGATTATCGTATGCTATGGGTTACGTGTATTATGTCAGTAATGAATgtgcattattttaaatgtgcaatTTTGTTTGAATGAAGAGGACAGTGTGTGGGAagtgtgatttttattatttttgaacttttaaacaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87306 lncRNA downstream 6685 17606894 ~ 17670417 (-) True G64688
TU87318 lncRNA downstream 34873 17640160 ~ 17642229 (-) True G64694
TU87293 lncRNA downstream 95510 17578797 ~ 17581592 (-) False G64682
TU87295 lncRNA downstream 95510 17579166 ~ 17581592 (-) False G64682
TU87298 lncRNA downstream 95510 17580422 ~ 17581592 (-) True G64682
TU87312 lncRNA upstream 149 17678814 ~ 17689287 (-) True LOC103043390
TU87520 lncRNA upstream 11564 17690229 ~ 17719911 (-) True G64835
TU87521 lncRNA upstream 20441 17699106 ~ 17719911 (-) False G64835
TU87528 lncRNA upstream 29331 17707996 ~ 17715442 (-) True G64841
TU87545 lncRNA upstream 90582 17769247 ~ 17815728 (-) True G64857
XM_022671179.1 mRNA downstream 12541 17591701 ~ 17664561 (-) False LOC111192911
XM_022671176.1 mRNA downstream 370026 17103295 ~ 17307076 (-) True cep112
XM_022671415.1 mRNA downstream 580277 17046363 ~ 17096825 (-) False LOC103042974
XM_022671413.1 mRNA downstream 592621 17046363 ~ 17084481 (-) False LOC103042974
XM_022671414.1 mRNA downstream 592621 17046363 ~ 17084481 (-) True LOC103042974
XM_022671452.1 mRNA upstream 3602 17682267 ~ 17689312 (-) False LOC103043390
XM_022671180.1 mRNA upstream 42464 17721129 ~ 17731699 (-) True stk19
XM_022671442.1 mRNA upstream 104087 17782752 ~ 17797809 (-) True LOC111192974
XM_022671421.1 mRNA upstream 128409 17807074 ~ 17817082 (-) True LOC111192966
XM_022671424.1 mRNA upstream 161514 17840179 ~ 17855162 (-) True ush1g
TU87272 other downstream 79557 17586845 ~ 17597545 (-) True LOC111192911
TU87588 other upstream 249842 17928507 ~ 17931170 (-) True G64886
TU87843 other upstream 964706 18643371 ~ 18650343 (-) False LOC111192971
TU88001 other upstream 1219520 18898185 ~ 18919522 (-) False G65184
TU88002 other upstream 1219520 18898185 ~ 19023658 (-) True G65184
TU88053 other upstream 1601637 19280302 ~ 19284032 (-) True G65231

Expression Profile