RNA id: TU87330



Basic Information


Item Value
RNA id TU87330
length 292
lncRNA type sense_over
GC content 0.55
exon number 2
gene id G64698
representative False

Chromosome Information


Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17690209 ~ 17719912 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


AGTGGTACCCAGAAGTAAGACACCACTGTCCAAACACTCCCATCATCCTGGTAGGAACTAAACTCGATCTGAGGGACGATCAGGACACCATCGAGAAGCTGAAGGAGAGGAAGCTCACCCCCATCACCTACCCTCAGGGCCTGGCCATGGCTAAAGAGATCGGAGCCGTAAAGTACCTGGAGTGCTCAGCCCTGACTCAGCGCGACcttaaaacagtgtttgatGAAGCCATCAGAGCCGTCCTCTGCCCTCCGCCGGTGAAGAGCAGGAAGAGGAAGTGCACCCTGCTGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87324 lncRNA upstream 2293 17690209 ~ 17715175 (+) False G64698
TU87170 lncRNA upstream 39026 17677928 ~ 17678442 (+) True G64595
TU87161 lncRNA upstream 43307 17622861 ~ 17674161 (+) True G64586
TU87142 lncRNA upstream 94796 17565712 ~ 17622672 (+) True G64579
TU87358 lncRNA downstream 49819 17769247 ~ 17815728 (+) True G64710
TU87352 lncRNA downstream 61254 17780682 ~ 17812684 (+) True G64709
TU87357 lncRNA downstream 61254 17780682 ~ 17815649 (+) False G64709
TU87355 lncRNA downstream 62092 17781520 ~ 17812684 (+) False G64709
TU87407 lncRNA downstream 238185 17957613 ~ 18008671 (+) True G64753
XM_022671443.1 mRNA upstream 14553 17690206 ~ 17702915 (+) True LOC111192975
XM_022671178.1 mRNA upstream 135340 17568799 ~ 17582128 (+) True LOC111192910
XM_022671177.1 mRNA upstream 160915 17309065 ~ 17556553 (+) True LOC111192909
XM_022671409.1 mRNA upstream 834529 16833290 ~ 16882939 (+) False LOC103030423
XM_022671407.1 mRNA upstream 906238 16784106 ~ 16811230 (+) False LOC103035087
XM_022671428.1 mRNA downstream 12666 17732094 ~ 17745773 (+) True LOC107197389
XM_022671429.1 mRNA downstream 12666 17732094 ~ 17745773 (+) False LOC107197389
XM_022671434.1 mRNA downstream 29200 17748628 ~ 17764121 (+) True LOC111192970
XM_022671427.1 mRNA downstream 49500 17768928 ~ 17780592 (+) True LOC111192968
XM_007242882.2 mRNA downstream 84856 17804284 ~ 17805826 (+) True amn
TU86972 other upstream 829273 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 841527 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 853014 16833296 ~ 16864454 (+) False LOC103030423
TU86945 other upstream 963908 16753043 ~ 16753560 (+) True G64431
TU86763 other upstream 1275019 16439220 ~ 16442449 (+) True G64289
TU87714 other downstream 900432 18619860 ~ 18623499 (+) True G64990
TU87957 other downstream 1557374 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 1560872 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 2061235 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 3237707 20957135 ~ 20957635 (+) True G65565

Expression Profile