RNA id: TU87352


Basic Information

Item Value
RNA id TU87352
length 1647
lncRNA type sense_over
GC content 0.31
exon number 2
gene id G64709
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17780682 ~ 17815649 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttattgcaacGATCGGCTCAAATAATTAATCCCACATTTTGATAAGATTAAATCtcatttacagtaccagtcaaaagtatttttttttactccctacattgtaaatgaatactgaagtgatccagaggGGTggacctgatgagtgccagtttcaccatcattgcatttttgatggtcttttttgcgactgcacttaagaatattttttgagttcttaaaattgactttttgtttgactaaacttattttttgtaagacattttttacttttctttatttagttgagtagttcttgcttctcataatattagatattagaacattactcactattattcactattcactgtatacctgtaactcttcTTGTAatctcttcactactttactttaactgatgctctcaaacactttattaagagacaagaaattcaagtaattaactcttgatgagttcagcacagctgttaactgaaagcctgaattccaggagactctacctcataaaactgactgagaaaatccagcagagatgttcaaaactgatcatctaaaatcgtctattttggtttgttttcttcatagtttggatgcctttagtattaatctataatgcaaaatgttttaaattaatgatttaaatttagggtatgtccaaacttttgactatttgactggtactgcatcTCTCAACAATGAGAATGaaattattaaagaaaactTCACCACCAATCAAAAAAAGCAGAATGTGTGTCAATCATCAATAACAGAATCACATCCcatagaaaataatatatagaaaatatatatatatattaatatattgcatCATCCTTCCACtttgaaatatatttacactatattgatacagtatatataccccaccctattatatttaaaaggaaACATAAATCTAAGAGCCAGAGAAATCTGTCTCAAATACCCCAAACACCACATTCACGCGGATAaaggtgctggtgattctgtatctactgtaactgtagattaatcattatttataaactctaaatctgttacactcattctgGCAGAAATAcacaattcagcacaacacctggaatgGCAACTCATCGAACAttttacaaaccaatcagtgggTGTAGTATAgtgagactccgcccacataggTGATGATGACTagaggatgtagtaaagttgtttagttgtttgggtttttaggtgtgaaaacatcCCAATAATAGAAAATGAGGTACCAGTTTAAGTTTAACAAGGCTCCAttattaagggtttataaaggatttataagtAAATGAGtctataaatgattattaatttagttgtaaatactttaaaaccactaataagcagttacaacaaatCAATAGAAAGGAAAACAGTGGGCTGTCATttgccaaatattgattccacATTAATTTATACTGGTAATCTTTGTCTTTTCTATCAGTCAGCACTAACATATAGAgctctttctttgattttaccaaattgaaaacctctgaaatatataagggataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcattaaaaaaaactgtgattaaaaaccatcagggttattccaccaaatattaatttctgaactcaaaatcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87329 lncRNA upstream 60770 17716918 ~ 17719912 (+) True G64698
TU87330 lncRNA upstream 61254 17717468 ~ 17719428 (+) False G64698
TU87324 lncRNA upstream 65507 17690209 ~ 17715175 (+) False G64698
TU87170 lncRNA upstream 102240 17677928 ~ 17678442 (+) True G64595
TU87161 lncRNA upstream 106521 17622861 ~ 17674161 (+) True G64586
TU87407 lncRNA downstream 144929 17957613 ~ 18008671 (+) True G64753
TU87408 lncRNA downstream 159895 17972579 ~ 18061330 (+) True G64754
TU87425 lncRNA downstream 186691 17999375 ~ 18000064 (+) True G64760
TU87429 lncRNA downstream 194470 18007154 ~ 18008138 (+) True G64763
TU87430 lncRNA downstream 199797 18012481 ~ 18348193 (+) True G64764
XM_022671427.1 mRNA upstream 90 17768928 ~ 17780592 (+) True LOC111192968
XM_022671434.1 mRNA upstream 16561 17748628 ~ 17764121 (+) True LOC111192970
XM_022671428.1 mRNA upstream 34909 17732094 ~ 17745773 (+) True LOC107197389
XM_022671429.1 mRNA upstream 34909 17732094 ~ 17745773 (+) False LOC107197389
XM_022671453.1 mRNA upstream 60824 17707970 ~ 17719858 (+) True LOC111192980
XM_022671418.1 mRNA downstream 47533 17860217 ~ 17879272 (+) True otop2
XM_022671451.1 mRNA downstream 111662 17924346 ~ 17929849 (+) True LOC111192979
XM_022671181.1 mRNA downstream 172281 17984965 ~ 18132010 (+) True LOC103040205
XM_022671423.1 mRNA downstream 348388 18161072 ~ 18172237 (+) True LOC103030006
XM_022671422.1 mRNA downstream 363543 18176227 ~ 18193170 (+) True LOC107197388
TU87328 other upstream 61254 17690209 ~ 17719428 (+) False G64698
TU86972 other upstream 892487 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 904741 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 916228 16833296 ~ 16864454 (+) False LOC103030423
TU86945 other upstream 1027122 16753043 ~ 16753560 (+) True G64431
TU87714 other downstream 807176 18619860 ~ 18623499 (+) True G64990
TU87957 other downstream 1464118 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 1467616 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 1967979 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 3144451 20957135 ~ 20957635 (+) True G65565

Expression Profile