RNA id: TU87430


Basic Information

Item Value
RNA id TU87430
length 339
lncRNA type read_through
GC content 0.36
exon number 2
gene id G64764
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18012481 ~ 18348193 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTCTCTCTTCATCCAGATCAAAGTCTGAACTAAGCttaatttatttgttacattgtaACAAATTCTGTTCTGTATTTAATCCGGTTATtttagtttcggtttcacactgTAGTTTTTCAAAACTGAGCGACTAAACATCTTTACTACACCCTCTATTCATCATTGCTCAcctatgtgggcggagtctacCTATACTTCaccctgattggtttgtagaatgctgtcaattataaaaaaaaagttgcagttTCGGCAGGTTACGCCTCCCTGCCAGAATGCAAAACCAgttttatattttagattctctgctggattttctcagtcagttttatgaggta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87407 lncRNA upstream 3810 17957613 ~ 18008671 (+) True G64753
TU87429 lncRNA upstream 4343 18007154 ~ 18008138 (+) True G64763
TU87425 lncRNA upstream 12417 17999375 ~ 18000064 (+) True G64760
TU87358 lncRNA upstream 196753 17769247 ~ 17815728 (+) True G64710
TU87483 lncRNA downstream 14644 18362837 ~ 18438856 (+) True G64803
TU87499 lncRNA downstream 53884 18402077 ~ 18424329 (+) True G64816
TU87487 lncRNA downstream 55695 18403888 ~ 18414135 (+) True G64806
TU87505 lncRNA downstream 70554 18418747 ~ 18422187 (+) True G64822
TU87519 lncRNA downstream 156758 18504951 ~ 18505727 (+) True G64834
XM_022671451.1 mRNA upstream 82632 17924346 ~ 17929849 (+) True LOC111192979
XM_022671418.1 mRNA upstream 133209 17860217 ~ 17879272 (+) True otop2
XM_007242882.2 mRNA upstream 206655 17804284 ~ 17805826 (+) True amn
XM_022671427.1 mRNA upstream 231889 17768928 ~ 17780592 (+) True LOC111192968
XM_022671434.1 mRNA upstream 248360 17748628 ~ 17764121 (+) True LOC111192970
XM_022671438.1 mRNA downstream 283219 18631412 ~ 18634243 (+) True LOC103027278
XM_022671448.1 mRNA downstream 303935 18652128 ~ 18654689 (+) True LOC111192977
XM_022671439.1 mRNA downstream 309083 18657276 ~ 18669434 (+) True LOC111192972
XM_022671412.1 mRNA downstream 321239 18669432 ~ 18683116 (+) True LOC107197347
XM_022671430.1 mRNA downstream 339064 18687257 ~ 18706546 (+) True LOC103035713
TU87328 other upstream 293053 17690209 ~ 17719428 (+) False G64698
TU86972 other upstream 1124286 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 1136540 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 1148027 16833296 ~ 16864454 (+) False LOC103030423
TU86945 other upstream 1258921 16753043 ~ 16753560 (+) True G64431
TU87714 other downstream 271667 18619860 ~ 18623499 (+) True G64990
TU87957 other downstream 928609 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 932107 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 1432470 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 2608942 20957135 ~ 20957635 (+) True G65565

Expression Profile