RNA id: TU87437


Basic Information

Item Value
RNA id TU87437
length 378
lncRNA type intronic
GC content 0.49
exon number 3
gene id G64770
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18050049 ~ 18051243 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACACCGTACCATAAACCGTACCCTACACTGTACCTTACACCATACCCTACACTGTACCCTACACCTTACCATACATCGTACCCTACACCGTACCATAAACCGTACCCTACACTGTACCTTACACCATACCCTACACTGTACCCTACACCTTACCATACATCGTACCCTACACCGTACCATAAACCGTACCCTACACTGTACCCTACACCGtaccctacacCGTACCCTACACTGTACCCTACACCGtaccctacaccttaccctacACTGTACCCTAAGCACCTCCCTGAAAAAACTGGAAGCTTTATTTTGTACTTCTGCGTCAAACCGTACACCGTTGCCTACGTACCACCGCAAGGGAGAGAGCgctatctact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87433 lncRNA upstream 21294 18028086 ~ 18028755 (+) True G64766
TU87407 lncRNA upstream 41378 17957613 ~ 18008671 (+) True G64753
TU87429 lncRNA upstream 41911 18007154 ~ 18008138 (+) True G64763
TU87425 lncRNA upstream 49985 17999375 ~ 18000064 (+) True G64760
TU87358 lncRNA upstream 234321 17769247 ~ 17815728 (+) True G64710
TU87443 lncRNA downstream 63731 18114974 ~ 18123899 (+) True G64776
TU87457 lncRNA downstream 147753 18198996 ~ 18230483 (+) True G64787
TU87464 lncRNA downstream 214996 18266239 ~ 18329102 (+) False G64792
TU87465 lncRNA downstream 214996 18266239 ~ 18329102 (+) True G64792
TU87472 lncRNA downstream 255662 18306905 ~ 18384819 (+) True G64794
XM_022671451.1 mRNA upstream 120200 17924346 ~ 17929849 (+) True LOC111192979
XM_022671418.1 mRNA upstream 170777 17860217 ~ 17879272 (+) True otop2
XM_007242882.2 mRNA upstream 244223 17804284 ~ 17805826 (+) True amn
XM_022671427.1 mRNA upstream 269457 17768928 ~ 17780592 (+) True LOC111192968
XM_022671434.1 mRNA upstream 285928 17748628 ~ 17764121 (+) True LOC111192970
XM_022671423.1 mRNA downstream 109829 18161072 ~ 18172237 (+) True LOC103030006
XM_022671422.1 mRNA downstream 124984 18176227 ~ 18193170 (+) True LOC107197388
XM_022671449.1 mRNA downstream 145512 18196755 ~ 18213076 (+) True LOC111192978
XM_022671441.1 mRNA downstream 164449 18215692 ~ 18251351 (+) True LOC111192973
XM_022671438.1 mRNA downstream 580169 18631412 ~ 18634243 (+) True LOC103027278
TU87328 other upstream 330621 17690209 ~ 17719428 (+) False G64698
TU86972 other upstream 1161854 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 1174108 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 1185595 16833296 ~ 16864454 (+) False LOC103030423
TU86945 other upstream 1296489 16753043 ~ 16753560 (+) True G64431
TU87714 other downstream 568617 18619860 ~ 18623499 (+) True G64990
TU87957 other downstream 1225559 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 1229057 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 1729420 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 2905892 20957135 ~ 20957635 (+) True G65565

Expression Profile