RNA id: TU87443


Basic Information

Item Value
RNA id TU87443
length 1028
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G64776
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18114974 ~ 18123899 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

actgaagtgctctcaatgacaataatattgtttgttgcattaatttatGAATTTATGGTGATGTATATCAGTGTCGGCATATTCTTAAGGTTATTGGAATTGGTATCATTGATATTGATAATATTGTAGTATCATGCAAACTATAGTATTTACATCAGCAATATGAACTGTTCCtattaatactgttttaatTAAACAGTGTGGAGGATCTGGCGGAGCTGCCCGGGGCTGAGGTGTGGGGTATGAAGGGTTTGAGCTGCTTTATGTGATCCGCCGGCTCGTGGGGTTACGCTAACATTACAGTTTATCTAAGCCATCACTGAAACGGCCTCTAATTACACACTGTAAACCGCACTGCGCTCTCGGCTGGAGCGCTTCctgaaagttttattttttttaaaagcctgGCCTGAGTTTCCCTGTAGCTCCTGCTGACTATCCTTACACACATTTCTCTACCAGTTTATCGTTCAGCTCCTACTCTACGCTGTATAtcctcccccatcactagtgattctcCAACActcctcctccgacacatgtgacgTCAGACTCCGCcacttttttaacctttttatcgagtagcatcacagctctaacgctcggaggaaagcgcagcgactctggtggttctgatacatcagctcacagacgcagccttgtgctgatccacatcaccctaggagtgatgaggggaaagagagagcgacatctactgtactgtacccacccagagagaaacagcaaggaGAGAGCAACTgtgctgtgctctctcagggctccggcagctgattgcaagctgcataacgtggattcgaaccagtgatatCCCAGTTATGATGGCAGCGTTTTAGACTGCTAAACCACGCGGCACCTATTCATGGAACATGGAACCaggatcagaaaaaaaattaactttttacaGTTCTTAATTCgtaatgtgattttttaattttattttaaagtaactttCTTGTAAATCAGCAGAAATTACAATACACATTTAATAGATCTTAGATTAGGCcaac

Function

GO: NA

KEGG:

id description
ko04014 Ras signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87408 lncRNA upstream 53644 17972579 ~ 18061330 (+) True G64754
TU87437 lncRNA upstream 63731 18050049 ~ 18051243 (+) True G64770
TU87433 lncRNA upstream 86219 18028086 ~ 18028755 (+) True G64766
TU87407 lncRNA upstream 106303 17957613 ~ 18008671 (+) True G64753
TU87429 lncRNA upstream 106836 18007154 ~ 18008138 (+) True G64763
TU87457 lncRNA downstream 75097 18198996 ~ 18230483 (+) True G64787
TU87464 lncRNA downstream 142340 18266239 ~ 18329102 (+) False G64792
TU87465 lncRNA downstream 142340 18266239 ~ 18329102 (+) True G64792
TU87472 lncRNA downstream 183006 18306905 ~ 18384819 (+) True G64794
TU87477 lncRNA downstream 210617 18334516 ~ 18355513 (+) True G64797
XM_022671451.1 mRNA upstream 185125 17924346 ~ 17929849 (+) True LOC111192979
XM_022671418.1 mRNA upstream 235702 17860217 ~ 17879272 (+) True otop2
XM_007242882.2 mRNA upstream 309148 17804284 ~ 17805826 (+) True amn
XM_022671427.1 mRNA upstream 334382 17768928 ~ 17780592 (+) True LOC111192968
XM_022671434.1 mRNA upstream 350853 17748628 ~ 17764121 (+) True LOC111192970
XM_022671423.1 mRNA downstream 37173 18161072 ~ 18172237 (+) True LOC103030006
XM_022671422.1 mRNA downstream 52328 18176227 ~ 18193170 (+) True LOC107197388
XM_022671449.1 mRNA downstream 72856 18196755 ~ 18213076 (+) True LOC111192978
XM_022671441.1 mRNA downstream 91793 18215692 ~ 18251351 (+) True LOC111192973
XM_022671438.1 mRNA downstream 507513 18631412 ~ 18634243 (+) True LOC103027278
TU87328 other upstream 395546 17690209 ~ 17719428 (+) False G64698
TU86972 other upstream 1226779 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 1239033 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 1250520 16833296 ~ 16864454 (+) False LOC103030423
TU86945 other upstream 1361414 16753043 ~ 16753560 (+) True G64431
TU87714 other downstream 495961 18619860 ~ 18623499 (+) True G64990
TU87957 other downstream 1152903 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 1156401 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 1656764 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 2833236 20957135 ~ 20957635 (+) True G65565

Expression Profile