RNA id: TU87457


Basic Information

Item Value
RNA id TU87457
length 333
lncRNA type read_through
GC content 0.44
exon number 2
gene id G64787
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18198996 ~ 18230483 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtttgtttgtcctctcggtcacatgacatcatgttcagtagctccccCATTtacactcgctgttgtgttttacgtggatctccgtggaaaccgtggcgcatccaaagtgtaattacggtgcgcggcagtggacaaatatctattttattaaaggcgaggagacgaaactcagagatgtgcatccggacgggactaaaattaccggaggagcacggagttcagagaaaaacagtagataattcagcctgtaatttttttatctcagaggacgtctgagaaaaacacgtacatgatcgttctggacgggaataaaatcacagaggataaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87443 lncRNA upstream 75097 18114974 ~ 18123899 (+) True G64776
TU87408 lncRNA upstream 137666 17972579 ~ 18061330 (+) True G64754
TU87437 lncRNA upstream 147753 18050049 ~ 18051243 (+) True G64770
TU87433 lncRNA upstream 170241 18028086 ~ 18028755 (+) True G64766
TU87407 lncRNA upstream 190325 17957613 ~ 18008671 (+) True G64753
TU87464 lncRNA downstream 35756 18266239 ~ 18329102 (+) False G64792
TU87465 lncRNA downstream 35756 18266239 ~ 18329102 (+) True G64792
TU87472 lncRNA downstream 76422 18306905 ~ 18384819 (+) True G64794
TU87477 lncRNA downstream 104033 18334516 ~ 18355513 (+) True G64797
TU87479 lncRNA downstream 114469 18344952 ~ 18345563 (+) True G64799
XM_022671422.1 mRNA upstream 5826 18176227 ~ 18193170 (+) True LOC107197388
XM_022671423.1 mRNA upstream 26759 18161072 ~ 18172237 (+) True LOC103030006
XM_022671181.1 mRNA upstream 66986 17984965 ~ 18132010 (+) True LOC103040205
XM_022671451.1 mRNA upstream 269147 17924346 ~ 17929849 (+) True LOC111192979
XM_022671418.1 mRNA upstream 319724 17860217 ~ 17879272 (+) True otop2
XM_022671438.1 mRNA downstream 400929 18631412 ~ 18634243 (+) True LOC103027278
XM_022671448.1 mRNA downstream 421645 18652128 ~ 18654689 (+) True LOC111192977
XM_022671439.1 mRNA downstream 426793 18657276 ~ 18669434 (+) True LOC111192972
XM_022671412.1 mRNA downstream 438949 18669432 ~ 18683116 (+) True LOC107197347
XM_022671430.1 mRNA downstream 456774 18687257 ~ 18706546 (+) True LOC103035713
TU87328 other upstream 479568 17690209 ~ 17719428 (+) False G64698
TU86972 other upstream 1310801 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 1323055 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 1334542 16833296 ~ 16864454 (+) False LOC103030423
TU86945 other upstream 1445436 16753043 ~ 16753560 (+) True G64431
TU87714 other downstream 389377 18619860 ~ 18623499 (+) True G64990
TU87957 other downstream 1046319 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 1049817 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 1550180 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 2726652 20957135 ~ 20957635 (+) True G65565

Expression Profile