RNA id: TU87521


Basic Information

Item Value
RNA id TU87521
length 3297
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G64835
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17690229 ~ 17719911 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acgGGAAAAATATGTTGCTATAAATGTGCCGTTAACAAAAACACCCTGTAAAGAATATTTactgctgtatttattataagGTTTATTATAAATGCATCGAAACCATTAAAGGATCAAGAATACAGATAGCCCTAATATATATAGTGTTCTTTTATATGATCGATGCATCgattcccaTACACACATATTTTCACATACACTtcagtacacacatacacacactttccacactttcagacctcagtttgtttgtttccaTCTCGTTAATCTCATTAATCGTGTTTTACATAGGTTAGACTGGTATATTGAAGAGGACTAGCTTggattagcttagcatagcttgACGATAGCGAGTTACAATCTTGCTGTAGCGTAGTTAAGAGGTATATCTGTGCTTCTGTTGAAGCAGGTAAACAACACTGAAGCTGTTCAGGCCCAAAATCTTCATATTTAACAGTAAAACTCAAAGACAATGGGTGAATCCCAATTGTAAACTAATTACCAATACTAACTATAGGTGTTTGAGTATTTAGTACTTAGTATACATAAAATCTATCCTTCCAAACCCTCAGTATTAATGGTAGTACACAATCTTTACCTCATAGTATTAGCGTAGTATTGTGTAGAACACAATTGCGATGCTCTAAGTGAAATGCTGCGTTCAATTTTCCTCGGAATTCGAATGAAGAAACCGACTGATTGACTGACGGCGTTccaacatctccaaaacatttCGTCAGCTTAAATTAAGACTTTTGTTTGACAATcattgagtagaagtgtaagaaaatatcgatattgtattattttgcaATATTTCGTTTGGCAACACATTATCAatattcaaaaacacagtactgATTGTTGATTATTAGCTTGggtgtaaagattggtgtcagaagtggttcatttagtgttgtgtttaaactccaaccactagatggcagtgcTGTACTCTGctgttagatcccactgttctgattggataaaaatgtttaattttcaaTATATCAACTTGATTACAGTAACAGTATCCCAATATATTGTACTATAATTGAATGAATTGTCTACCCATCATATCCACATTTTacgtcccaggttagcattgctaaCACTGTTAGTGAAACCAAAGAGAATTAAACGTGAATGATGGCATTTAaacaattataacattttttcgCAGGTTTTTGATTATTAAATACGCCGTTTTACAGCAGAAACTGTCTGCAAACTGCCATTTAATGCCACAGTTTATTAGGAATTATAAGACTTTTTCTGctgaataattttatttggcgATAATTCGGTGCATAcctacaatatatattataattttccaTCCAAGAAACCCTTGAGGGAAACCTAATATTAGATAGAAgtgataataaactgtataatatacTGGTGATATGCGTGGGTTGGACTTGGTAAAGCTTTCCCAACTTTCTGAGTATGAACTCCTGCTGGTGAGGGAGCTCCAGGTTAAATATCATACTTGGATCCAAGATCTAAAGAAACGCAGCAATAGTGTTCAATAATTCATGATGATCATGTAGTacttaatacaaatatatagcCAGTGATGAACTCTCCACAATACCACAACCAGAtttagtgttttcttttttctatgctaaatattaataagtgtttgtgtttacatgcacttcataaATCCGATTACTGCAGAACATTAGTAAGCTGATTTTGTCAGAAATCCATTAAAGACGTTTACATGAATTTGGGTAATTAGATAACTTTATATAAGTCAGATAATCAATAATTAGAACTCAGCTTTTTGCGACCAGCCAGTAAACTCGAAGaataaaggccaatttatacttctgcattgCATTTTCTATGGAGCAGCCTGTGCGAGCGCCCTATGCAGCTGTCTttttttttttttacttctgtatTCTGCGTTTGTGTATCCGCGACTATACATTGTTCTGAAGGTTAAATTGTACATGTAAGCTGCACTGTATGTTTCATGCAAATGTATACATTGGCCTTgtggaaccagttaacagagagcattagaagagcaCCAACACTAAACGCTTTTAAATTCAGActaaaaacctacatgtttgatcagacCTTCAGCTTAGCCTAAAACattgcagctccgcccacttttattctgtaacagtatcatgttttattcatgctttattttattatagtttttttatttgacttctattcgtattttttaaataataaacttgccttgccttgcgaCGTGACGTAAATTTTACGTAAAACCCGAACTTTACGCATCTGCTTCTCATGGGTGCTGCCCTATTAAacactgtttgtttatttctgctACCAGGGTCTGTTTTCACGCATGCACACAGAATAAGACCTACGAGAACAATCTGGTTAAGAGAATACATGCcctgaaaaatacagaaatctgattaagattttctattttaatctgagtaattagattttttttttttatcttaatctgatttatacACCGTTTCACTATATCTCAATCTAGGAACATCTAAGAATTGGATTATGTTACTACTTTTAACTACTAATAAATCAGACTGCAGTAATCGGATTTTGattgcatgtaaacacacttaGTGACTAATCTATAAggaattttattattacaagACACAGGGCACGCTTACTGTTCACTACAACACTTTTCAAgtcaataaaacataaaaatgaaccagatgtagtgtgtgtgtgtgtgttaacgaCGTTGTAactgcagcagtgctatttGGCAAAGACCTTCATTCCATTCCAACAAAGACTGTAAACAGCGAACCAAGCGCGAGATAGCTCCTCAAAACGTGACGGGTGATGTGTGATGTGTTCAAAGGCCTCAGGAATTCTAATATTGGGTTTGTGTGTGAACATCTGTCTAAGGGAAGATGGATCTGAGGTCAATTTGTTCCGTTTCTATATCtatagatgatcagttttgtgAAGGTAAAAGTGTGTACTGGTCTTCAGGAAGGAGACGGTGTCTGGAATCAGCTCTGTTTCTCTCCGTTTCCCTCAGAACTCAGTACAGACCTCCGGTCCTCTCCTCCACTTCTACAGCAGGGTGCACTTCCTCTTCCTGCTCTTCACCGGCGGAGGGCAGAGGACGGCTCTGATGGCTTCatcaaacactgttttaagGCCGCGCTGAGTCAGGGCTGAGCACTCCAGGTACTTTACGGCTCCTGCAGGATAAACCAGAGAACAGacatcagtttaaaatgttctgtactgtagattaacactaaagtcatccaaactatgaagaaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87312 lncRNA downstream 9819 17678814 ~ 17689287 (-) True LOC103043390
TU87313 lncRNA downstream 20441 17677102 ~ 17678665 (-) True G64692
TU87316 lncRNA downstream 20441 17677897 ~ 17678665 (-) False G64692
TU87315 lncRNA downstream 21425 17677102 ~ 17677681 (-) False G64692
TU87318 lncRNA downstream 56877 17640160 ~ 17642229 (-) True G64694
TU87545 lncRNA upstream 49336 17769247 ~ 17815728 (-) True G64857
TU87563 lncRNA upstream 91265 17811176 ~ 17953544 (-) True G64867
TU87582 lncRNA upstream 160539 17880450 ~ 17882420 (-) True G64882
TU87601 lncRNA upstream 257636 17977547 ~ 17978089 (-) False G64898
TU87602 lncRNA upstream 257844 17977755 ~ 17978089 (-) True G64898
XM_022671452.1 mRNA downstream 9794 17682267 ~ 17689312 (-) False LOC103043390
XM_022671179.1 mRNA downstream 34545 17591701 ~ 17664561 (-) False LOC111192911
XM_022671176.1 mRNA downstream 392030 17103295 ~ 17307076 (-) True cep112
XM_022671413.1 mRNA downstream 614625 17046363 ~ 17084481 (-) False LOC103042974
XM_022671180.1 mRNA upstream 1218 17721129 ~ 17731699 (-) True stk19
XM_022671442.1 mRNA upstream 62841 17782752 ~ 17797809 (-) True LOC111192974
XM_022671421.1 mRNA upstream 87163 17807074 ~ 17817082 (-) True LOC111192966
XM_022671424.1 mRNA upstream 120268 17840179 ~ 17855162 (-) True ush1g
XM_022671425.1 mRNA upstream 122065 17841976 ~ 17855162 (-) False ush1g
TU87272 other downstream 101561 17586845 ~ 17597545 (-) True LOC111192911
TU87588 other upstream 208596 17928507 ~ 17931170 (-) True G64886
TU87843 other upstream 923460 18643371 ~ 18650343 (-) False LOC111192971
TU88001 other upstream 1178274 18898185 ~ 18919522 (-) False G65184
TU88002 other upstream 1178274 18898185 ~ 19023658 (-) True G65184
TU88053 other upstream 1560391 19280302 ~ 19284032 (-) True G65231

Expression Profile