RNA id: TU87606


Basic Information

Item Value
RNA id TU87606
length 231
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G64902
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17999556 ~ 17999808 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tggaaaccgtggcgcgtccaaagtgtaattacggtgcgcggcagtggacaaatatctattttattaaaggcgaggagacgaaactcagagatgtgcgtccggacgggactaaaattaccggaggagcacggagttcagagaaaaacagtagataattcagcctgagaaaaacatgtacataaAAGAAACTAATaccatctggatagggctttagttgGCCTGTTAAAAATC

Function

GO:

id name namespace
GO:0001570 vasculogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87601 lncRNA downstream 21467 17977547 ~ 17978089 (-) False G64898
TU87602 lncRNA downstream 21467 17977755 ~ 17978089 (-) True G64898
TU87563 lncRNA downstream 46012 17811176 ~ 17953544 (-) True G64867
TU87582 lncRNA downstream 117136 17880450 ~ 17882420 (-) True G64882
TU87545 lncRNA downstream 183828 17769247 ~ 17815728 (-) True G64857
TU87608 lncRNA upstream 24266 18024074 ~ 18024657 (-) True G64904
TU87632 lncRNA upstream 172724 18172532 ~ 18173990 (-) True G64926
TU87646 lncRNA upstream 199255 18199063 ~ 18230483 (-) True G64936
TU87649 lncRNA upstream 203336 18203144 ~ 18222192 (-) True G64938
TU87661 lncRNA upstream 327913 18327721 ~ 18328460 (-) True G64948
XM_022671454.1 mRNA downstream 78745 17884620 ~ 17920811 (-) True hid1
XM_022671424.1 mRNA downstream 144394 17840179 ~ 17855162 (-) True ush1g
XM_022671425.1 mRNA downstream 144394 17841976 ~ 17855162 (-) False ush1g
XM_022671421.1 mRNA downstream 182474 17807074 ~ 17817082 (-) True LOC111192966
XM_022671442.1 mRNA downstream 201747 17782752 ~ 17797809 (-) True LOC111192974
XM_007243061.3 mRNA upstream 353525 18353333 ~ 18356495 (-) False LOC103047157
XM_007243060.3 mRNA upstream 353525 18353333 ~ 18356495 (-) True LOC103047157
XM_022671182.1 mRNA upstream 489844 18489652 ~ 18536743 (-) True LOC103034879
XM_022671440.1 mRNA upstream 539095 18538903 ~ 18550973 (-) True LOC103028836
XM_022671419.1 mRNA upstream 567869 18567677 ~ 18575169 (-) False LOC103028209
TU87588 other downstream 68386 17928507 ~ 17931170 (-) True G64886
TU87274 other downstream 402011 17586845 ~ 17597545 (-) False LOC111192911
TU87843 other upstream 643563 18643371 ~ 18650343 (-) False LOC111192971
TU88001 other upstream 898377 18898185 ~ 18919522 (-) False G65184
TU88002 other upstream 898377 18898185 ~ 19023658 (-) True G65184
TU88053 other upstream 1280494 19280302 ~ 19284032 (-) True G65231
TU88123 other upstream 1600406 19600214 ~ 19605682 (-) False ndufb2

Expression Profile