RNA id: TU87713



Basic Information


Item Value
RNA id TU87713
length 755
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G64990
representative False

Chromosome Information


Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18556128 ~ 18623499 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


atggaaaccgtggcgcgcccaaagtgtaattacgatgcgcggcagtggacaaatatctattttattaaaggcgaggagacgaaactcagagatgtgcgtccggacgggactaaaattaccggaggagcacggagttcagagaaaaacagtagataattcagcctgtaattttctcagaggacgtctgagaaaaacacctacatgatcgttctggacgggaataaaatcacagaggataaaaaactccataaaagataaaattacccagaaccccCCCCGCCAGATCCGCTCATACCGGACAGTGGGTCCGGCGGGCGAGGGCCCGGAGAGGCCCCGGCACCTAACGGACTACTGAACTACCATCTGATATCAACTATTCAGCTTTTATATGAGGATATAATaaagaaattataatataatataacattattcattataattacattattatcattattaggGATGCATCGAATACGGGCCAACTAAAATTATTTGCAAATATAAGCATTTTTTGGATAAAGCGTGTTTGGATGAAGTTAAAGCacaaaataatttataccaAACGCTGATACTGAGATATACTGAGTTCTGTATTGATTCTGTATTAGTtcagtttttatattaaacataaaataaaatagtttagttaaaaagcaagagaaatgtatatttatgctatttcatttttttaaaatagagaaaaagcagcaaaatTATGAAAGACGaaatgctttatttagtttggttttgattga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87519 lncRNA upstream 50401 18504951 ~ 18505727 (+) True G64834
TU87483 lncRNA upstream 117272 18362837 ~ 18438856 (+) True G64803
TU87738 lncRNA downstream 31279 18654778 ~ 18734150 (+) True G65011
TU87758 lncRNA downstream 88115 18711614 ~ 18759292 (+) True G65019
TU87784 lncRNA downstream 168683 18792182 ~ 18840564 (+) True G65044
TU87794 lncRNA downstream 210460 18833959 ~ 18834854 (+) True G65053
TU87898 lncRNA downstream 277953 18901452 ~ 18908686 (+) True G65116
XM_022671441.1 mRNA upstream 304777 18215692 ~ 18251351 (+) True LOC111192973
XM_022671449.1 mRNA upstream 343052 18196755 ~ 18213076 (+) True LOC111192978
XM_022671422.1 mRNA upstream 362958 18176227 ~ 18193170 (+) True LOC107197388
XM_022671423.1 mRNA upstream 383891 18161072 ~ 18172237 (+) True LOC103030006
XM_022671181.1 mRNA upstream 424118 17984965 ~ 18132010 (+) True LOC103040205
XM_022671438.1 mRNA downstream 7913 18631412 ~ 18634243 (+) True LOC103027278
XM_022671448.1 mRNA downstream 28629 18652128 ~ 18654689 (+) True LOC111192977
XM_022671439.1 mRNA downstream 33777 18657276 ~ 18669434 (+) True LOC111192972
XM_022671412.1 mRNA downstream 45933 18669432 ~ 18683116 (+) True LOC107197347
XM_022671430.1 mRNA downstream 63758 18687257 ~ 18706546 (+) True LOC103035713
TU87328 other upstream 836700 17690209 ~ 17719428 (+) False G64698
TU86972 other upstream 1667933 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 1680187 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 1691674 16833296 ~ 16864454 (+) False LOC103030423
TU86945 other upstream 1802568 16753043 ~ 16753560 (+) True G64431
TU87957 other downstream 653303 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 656801 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 1157164 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 2333636 20957135 ~ 20957635 (+) True G65565
TU88525 other downstream 2400676 21024175 ~ 21024574 (+) True G65575

Expression Profile