RNA id: TU87784


Basic Information

Item Value
RNA id TU87784
length 212
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G65044
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18792182 ~ 18840564 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agcgatgaacgtctgactgttggcgtctgtctaggttgtattcagtcagtggagctcctgtgttttctgttaccaagataaacaagataaaactccagaaatgtacctgaacacacctcctttccagaacaccacgcccatcagtgtagatatattcagaagctctgctgctgtttaaaccaggcaggaggaaggagtgaaaatagactgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87758 lncRNA upstream 32890 18711614 ~ 18759292 (+) True G65019
TU87738 lncRNA upstream 58032 18654778 ~ 18734150 (+) True G65011
TU87713 lncRNA upstream 168683 18556128 ~ 18623499 (+) False G64990
TU87703 lncRNA upstream 176024 18536667 ~ 18616158 (+) True G64980
TU87715 lncRNA upstream 222692 18567027 ~ 18569490 (+) True G64991
TU87898 lncRNA downstream 60888 18901452 ~ 18908686 (+) True G65116
TU87909 lncRNA downstream 104762 18945326 ~ 19032751 (+) False G65122
TU87905 lncRNA downstream 115009 18955573 ~ 19032751 (+) False G65122
TU87906 lncRNA downstream 115009 18955573 ~ 19032751 (+) True G65122
TU87908 lncRNA downstream 115009 18955573 ~ 19032751 (+) False G65122
XM_022671430.1 mRNA upstream 85636 18687257 ~ 18706546 (+) True LOC103035713
XM_022671432.1 mRNA upstream 85636 18687263 ~ 18706546 (+) False LOC103035713
XM_022671412.1 mRNA upstream 109066 18669432 ~ 18683116 (+) True LOC107197347
XM_022671439.1 mRNA upstream 122748 18657276 ~ 18669434 (+) True LOC111192972
XM_022671448.1 mRNA upstream 137493 18652128 ~ 18654689 (+) True LOC111192977
XM_022671417.1 mRNA downstream 149953 18990517 ~ 19019268 (+) True LOC111192965
XM_022671183.1 mRNA downstream 336438 19177002 ~ 19178587 (+) True LOC111192912
XM_022671184.1 mRNA downstream 382645 19223209 ~ 19249152 (+) True LOC103045528
XM_022671456.1 mRNA downstream 427858 19268422 ~ 19271847 (+) True LOC103043906
XM_022671461.1 mRNA downstream 436440 19277004 ~ 19279517 (+) True LOC103044219
TU87714 other upstream 168683 18619860 ~ 18623499 (+) True G64990
TU87328 other upstream 1072754 17690209 ~ 17719428 (+) False G64698
TU86972 other upstream 1903987 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 1916241 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 1927728 16833296 ~ 16864454 (+) False LOC103030423
TU87957 other downstream 436238 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 439736 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 940099 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 2116571 20957135 ~ 20957635 (+) True G65565
TU88525 other downstream 2183611 21024175 ~ 21024574 (+) True G65575

Expression Profile