RNA id: TU87810


Basic Information

Item Value
RNA id TU87810
length 2652
lncRNA type read_through
GC content 0.35
exon number 3
gene id LOC111192976
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18624875 ~ 18712520 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atatacacacactcacacaccccgAGACACAGGGACTGATCCAGCCGTCCACACACTGCGgtctcaccgctacACAGATCTGCACCAATTTCCTCCTGAAAactcctgtttatttgggtgagtaaagcacttctgtttatttacagtaagcttagattcccaaatttctccagcactaaggctggagcattagcattagcggctaacagcTCCAGAtatgctagccagggttaggtgGAGCCAACACTACTCACCTCTaaaggccgataatactcacctctgaacggggaaatagcggttagcggctaatgctaatactgctcctgtataactctgtacttcagtggagtggctttactgctccttaatacctgactgatagaattcatacataaggagcaccggattattttggggaaatttaaaggattttaggtgcaaaaaatacggtaaattaaaagtgttaaacaaatcaaaggGAATTAATGCTCTTCTATTCCTGGggtggccctgatgagtgcaagtttcatcattataatatattttatggtcctttttttgtgactgcagttgaggatatttttaaagttcttaaaacttaaaacaggaCTGACTGGCCTTTTTCttctttaagtcattttttactttgctttatttagttgagtagttcttgcttctcataatatgaaatattagaacattactcaaatagagctattcactgtacaccaactctaccttttaaaatttattttattcacctATTTGTGGATTTATTACAACAAAGATCCACAAAGCTGGAATGAATTAAAATTACGTGACATATTGTAATAAATGATGCTCATTTTTGCCTTAATTCTAATCCCAGTTTTTACATCCTCACATCCTTCATCCCTGCTTAAAAAAGCATAAACATCTGTTTTATATTGTCTAGAATAAGATATCTGCTCATTTATTTGGATCTAAAGACAGACGGAGGCTTTCCGGACAGAAATGAGATCTAGGCCTGAAATAAATCAAGATATTTATATGATTTCCCATTAAAAATCCCACATCCCACTgttctttaaaatgtactttatagtTTTGTAGCTGGGTGTATATCATTGTCATTAcacaataagaataataatataatatataataataatgtataaatctatataatttGGATATTTTCTCACACATACATCACTTAAATGCTGTTAAATCactcttaaattattatttttttttaattggctgtattCTACACTGTTACGTGTCTGcatgttcctctctctctttctctctcgcacgcttgctcgctctctctctctccctctctccctgtctctctctctataggtTGCACATCCTGTCAATCATCATTGAGCATGCTGCCGGCTAACCAATTGAGTGGAGACTGAGGCGGGACTTCCGGTATAAAAGCTGCGTGAAGGAGCTGCGCGGCGGCCTGCCGGCTCACACACTGACCACTCGTTTGAACGCTCCGTTTTTATTGTGGTTGCActctgttttattgcttttgtCAGAAACTAGTCAAGATCTTGCttctctgtgttactgaagtaGTGCTTTATTCAAAAGCTCTGTTTTGGTTCAGTCCTGAATTTTATATCTTTCTCCCGCTCAGATTGAGAACAGGTTAGACTGCGCGCGCACCTTCATTCCACCACGTAGGTAATTCATTGTATAAACACATTAGATTAAAAGGGCGGGTACCaacatatgtattttttgttttattagacTAGTGTAACTAGAcaggttttgtttgtttattcctTTTCTTTTGGGTAGTTAGGCTAGTCTCTTAAAATAGCTTagtgtgatttttgttttgttctgttcttttctttggtACCGTTCATCTTCTCTTTCTGAGGTGAGGTTAATCCAAATCATGTCTGTCTCTGATGTTTCCCCTGTTTGTTGCTGCATAActataaagtaaagaaaagcctaaataaatctaattacTTGTTCTGCTTTAAGCTGCCTGCTCTCCAGTCAATTCACTCCTTAGAAACCAGTTTCAAGTTCCACCTTAAGCGATCCATATCTAAATAATGTTACTGGTTCCGCTCTACACCCCTAGACCATGGCCTATTAAGTAGTGGGAACGTAACATACACAATGTCTGTTTAAATacacaatatgaattatttcaATACATATAGTTGTACGAAGAagtatttttgaaataaaaataagtaaaaacagcaaaagatatatattttcactCTGTACAAAAACATtctgttgtttatttaaaaaaaatgcagatttttaaTGCTCACAGATATTAGAATTCCACTGTAAATTGTTTATTGTGTATGAAATGAAATGGAATTATACATCATACATTTATCATGACCTGAAAACTTAAGCAATATgaataaatctgaataaaaaaatctgcgttcacactgcaggtaaaagtggcaCAGATCTGATCTTTTTGGTCGTTATTTGATACAGATTTATCATATACAGCGCAAgtgaaagtatttttaaacaggTTATAGCAGAactcaaaagaaaaagaattctAGACATTTatcagcattttttatttttattttgatgtttgtaaataattttgtaatatgttgtggatttggatattttaaatgtaatgtaaaattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87823 lncRNA downstream 1272 18619711 ~ 18623603 (-) True G65066
TU87830 lncRNA downstream 42859 18581608 ~ 18582016 (-) True G65069
TU87826 lncRNA downstream 64327 18560128 ~ 18560548 (-) True G65067
TU87825 lncRNA downstream 64327 18560203 ~ 18560548 (-) False G65067
TU87675 lncRNA downstream 179108 18444626 ~ 18445767 (-) True G64959
TU87880 lncRNA upstream 47280 18759800 ~ 18760297 (-) True G65102
TU87885 lncRNA upstream 47851 18760371 ~ 18816516 (-) True G65103
TU87890 lncRNA upstream 69351 18781871 ~ 18836432 (-) True G65108
TU87893 lncRNA upstream 121327 18833847 ~ 18835436 (-) True G65111
TU88004 lncRNA upstream 189107 18901627 ~ 18908694 (-) True G65185
XM_022671433.1 mRNA downstream 34805 18586569 ~ 18590070 (-) True tspan10
XM_022671419.1 mRNA downstream 49706 18567677 ~ 18575169 (-) False LOC103028209
XM_007241952.3 mRNA downstream 49706 18568250 ~ 18575169 (-) True LOC103028209
XM_022671440.1 mRNA downstream 73902 18538903 ~ 18550973 (-) True LOC103028836
XM_022671182.1 mRNA downstream 88132 18489652 ~ 18536743 (-) True LOC103034879
XM_007242359.3 mRNA upstream 4982 18717502 ~ 18718630 (-) True LOC103035404
XM_022671426.1 mRNA upstream 398613 19111133 ~ 19121460 (-) True LOC103035518
XM_022671457.1 mRNA upstream 593467 19305987 ~ 19319417 (-) True cdr2l
XM_022671463.1 mRNA upstream 696778 19409298 ~ 19515383 (-) True sema3c
XM_007232715.3 mRNA upstream 887728 19600248 ~ 19605725 (-) True ndufb2
TU87588 other downstream 693705 17928507 ~ 17931170 (-) True G64886
TU87274 other downstream 1027330 17586845 ~ 17597545 (-) False LOC111192911
TU88001 other upstream 185665 18898185 ~ 18919522 (-) False G65184
TU88002 other upstream 185665 18898185 ~ 19023658 (-) True G65184
TU88053 other upstream 567782 19280302 ~ 19284032 (-) True G65231
TU88123 other upstream 887694 19600214 ~ 19605682 (-) False ndufb2
TU88246 other upstream 1085159 19797679 ~ 19799602 (-) False llph

Expression Profile