RNA id: XM_022671444.1



Basic Information


Item Value
RNA id XM_022671444.1
length 650
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC111192976
representative False

Chromosome Information


Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18624875 ~ 18712520 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GCTGTAACTGcagggtgagagagaggggagaatgCGCGGTTGGGTCGGGTTGAGCAGAGCGGCGGGATTTCCGCACGTTTTACCGAACAGAACCGGATTCTATAACCCGGGACCGGTTCACACCCTGCCCCGAACCACCCCGACCCCGGCCCGGTACTGCGGGACCGGTACCGAACCGTACCGGGTCATCCACAACCGGGAGCAGCGCTGTTTCACCGTCAGCCTGCGGTCCGGGGCAGGTGTGGTGGACAGTGCGGTGCTAAAATACCGATACAGCACCGACCGACACGTTCACCTACTGTCCACTGCAGTCCCAGAATCCTTCAGAGGGAAAGGTGTGGCCTCTCACCTGGCAAAGGCTGCGATGGACTTTGTGGTGGAAGAAGGACTGAAAGCGACCGTCTCCTGTTGGTATATTCAAAAATATGTGGAGGAGAATCCAGGGTGTGGATATGAAGCTCATATAGAAGATTAGCTTCACTGTAAGATCAgatcagtacagtacagtatggaTTCAGATGAACAGTCTGGTTAATCTGTGGTGtgaatgttgggtttaaatcgTCACTTTTAAGCCGTCTGCCGGAGGTACAGACCGGATGTTGGATTGTTTTTAGATGATCTAATAAAAGCTGCATCTGCTGACCAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87823 lncRNA downstream 4175 18619711 ~ 18623603 (-) True G65066
TU87830 lncRNA downstream 45762 18581608 ~ 18582016 (-) True G65069
TU87826 lncRNA downstream 67230 18560128 ~ 18560548 (-) True G65067
TU87825 lncRNA downstream 67230 18560203 ~ 18560548 (-) False G65067
TU87675 lncRNA downstream 182011 18444626 ~ 18445767 (-) True G64959
TU87811 lncRNA upstream 75171 18705140 ~ 18709436 (-) False G65064
TU87812 lncRNA upstream 75171 18705140 ~ 18709436 (-) False G65064
TU87815 lncRNA upstream 75171 18705140 ~ 18709436 (-) False G65064
TU87816 lncRNA upstream 75171 18705140 ~ 18709436 (-) False G65064
TU87818 lncRNA upstream 75171 18705140 ~ 18709436 (-) True G65064
XM_022671433.1 mRNA downstream 37708 18586569 ~ 18590070 (-) True tspan10
XM_022671419.1 mRNA downstream 52609 18567677 ~ 18575169 (-) False LOC103028209
XM_007241952.3 mRNA downstream 52609 18568250 ~ 18575169 (-) True LOC103028209
XM_022671440.1 mRNA downstream 76805 18538903 ~ 18550973 (-) True LOC103028836
XM_022671182.1 mRNA downstream 91035 18489652 ~ 18536743 (-) True LOC103034879
XM_022671437.1 mRNA upstream 8338 18638307 ~ 18650301 (-) False LOC111192971
XM_022671436.1 mRNA upstream 8338 18638307 ~ 18650299 (-) False LOC111192971
XM_022671435.1 mRNA upstream 8338 18638307 ~ 18650298 (-) True LOC111192971
XM_007242359.3 mRNA upstream 87533 18717502 ~ 18718630 (-) True LOC103035404
XM_022671426.1 mRNA upstream 481164 19111133 ~ 19121460 (-) True LOC103035518
TU87588 other downstream 696608 17928507 ~ 17931170 (-) True G64886
TU87274 other downstream 1030233 17586845 ~ 17597545 (-) False LOC111192911
TU87843 other upstream 13402 18643371 ~ 18650343 (-) False LOC111192971
TU88001 other upstream 268216 18898185 ~ 18919522 (-) False G65184
TU88002 other upstream 268216 18898185 ~ 19023658 (-) True G65184
TU88053 other upstream 650333 19280302 ~ 19284032 (-) True G65231
TU88123 other upstream 970245 19600214 ~ 19605682 (-) False ndufb2

Expression Profile