RNA id: TU87843


Basic Information

Item Value
RNA id TU87843
length 821
RNA type TUCP
GC content 0.48
exon number 6
gene id LOC111192971
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18638307 ~ 18650343 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacagcatgTCCTGCAATAATGGGCCAAATGCTGCTGCTATGTTTACAGCCAGCCTGACGAGCaacagcttcagcttcagctgtGAGCTATTAAAAACCCTCAGACCCCACAGCTGAACACAAACCAGTACTGAGGGACTGGAGATACAAGGAAAGATCACAGCAACCCAGTTATACCATCTATACCATCTATACCATCTATACCATCTTTACCATCGATATCATCTAAACTACAGGACAAACCAGCTGAGATCCTGAGACCTCTAACTTCTGTCTGTCTACAATTCCTGAGTTTTAACTGATGGCCTAATAAATTATCAACACAATGGAGAGCAGTGTGACGGGCGTGACGGTGGTTCTGCTGGTGCCGGCGGTGGTGCTGGTGACTGCGGGGATATTTTACCTGTATGGAGTGATACTGCGGATGCTGAGGAAAACAACAGTGCGGAATAAAGTAGTGCTAATAACAGACTCAGCGTCAGCTCTGGGGAACGagtGCGCAAAACTGTTCCACAAGGGTGGAGCTCAGCTGATCCTCTGTGGGAAGAGCTGGGAAAAGCTAGAAGATCTGGCAGAACAGCTGGCAAACGAATCAGATCCAACTTTAACGTTCCCTCCTAAGTTAGTGGAGCTGGATTTCAGTGATACGGAGTCTCTGCCGGACATGGTCTCGGATGTTCTGGACTGTTACGGCTGTCTGGACGTGCTGATATTTAACAGCAGTATGAAGGTGAAGGCTCCcgcacacacactgtctctggAGATAGACAGGCTGGTGATGGATACTAACTACTTTGGACCCGTCACTCTGGCTAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87823 lncRNA downstream 19768 18619711 ~ 18623603 (-) True G65066
TU87830 lncRNA downstream 61355 18581608 ~ 18582016 (-) True G65069
TU87826 lncRNA downstream 82823 18560128 ~ 18560548 (-) True G65067
TU87825 lncRNA downstream 82823 18560203 ~ 18560548 (-) False G65067
TU87675 lncRNA downstream 197604 18444626 ~ 18445767 (-) True G64959
TU87811 lncRNA upstream 54797 18705140 ~ 18709436 (-) False G65064
TU87812 lncRNA upstream 54797 18705140 ~ 18709436 (-) False G65064
TU87815 lncRNA upstream 54797 18705140 ~ 18709436 (-) False G65064
TU87816 lncRNA upstream 54797 18705140 ~ 18709436 (-) False G65064
TU87818 lncRNA upstream 54797 18705140 ~ 18709436 (-) True G65064
XM_022671447.1 mRNA downstream 13402 18625075 ~ 18629969 (-) False LOC111192976
XM_022671445.1 mRNA downstream 13402 18625075 ~ 18629969 (-) False LOC111192976
XM_022671446.1 mRNA downstream 13402 18627778 ~ 18629969 (-) False LOC111192976
XM_022671444.1 mRNA downstream 13402 18627778 ~ 18629969 (-) False LOC111192976
XM_022671433.1 mRNA downstream 53301 18586569 ~ 18590070 (-) True tspan10
XM_007242359.3 mRNA upstream 67159 18717502 ~ 18718630 (-) True LOC103035404
XM_022671426.1 mRNA upstream 460790 19111133 ~ 19121460 (-) True LOC103035518
XM_022671457.1 mRNA upstream 655644 19305987 ~ 19319417 (-) True cdr2l
XM_022671463.1 mRNA upstream 758955 19409298 ~ 19515383 (-) True sema3c
XM_007232715.3 mRNA upstream 949905 19600248 ~ 19605725 (-) True ndufb2
TU87588 other downstream 712201 17928507 ~ 17931170 (-) True G64886
TU87272 other downstream 1045826 17586845 ~ 17597545 (-) True LOC111192911
TU88001 other upstream 247842 18898185 ~ 18919522 (-) False G65184
TU88002 other upstream 247842 18898185 ~ 19023658 (-) True G65184
TU88053 other upstream 629959 19280302 ~ 19284032 (-) True G65231
TU88123 other upstream 949871 19600214 ~ 19605682 (-) False ndufb2
TU88246 other upstream 1147336 19797679 ~ 19799602 (-) False llph

Expression Profile