RNA id: TU87885


Basic Information

Item Value
RNA id TU87885
length 469
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G65103
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18760371 ~ 18816516 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgtaagcgctgcatcgttgctaggttacctgtatagggcggagtaatacagtaatacatggagagcttcggttagagtgcattaccagctgataacggtactcacagaacacctctcagccaatcgcactgcagggtcggaactactgtaactgtagtaTAATACAAAGTATTAATAGAAGAAAGTAACACATCAGATATTGTTATTTTCAGAAGATCctacattactcaaatatgtctttatttgaactgtaaatattaacatttttttttatttgcattaatttGACAGTGATAAATGTGATTTAACATCATAGTCTTTGCATATCTTATTACTTATTTGAACAGTTACTTTTACCTAATAAACAATGATGGCTCATTTCTGAGGGCAAAGGTCTGAGGAATTTGGTTAATCCGGGAGGATGGATGAGATGATTGATTGGATGGAATTGATGGAATGGATGGGAtg

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87880 lncRNA downstream 74 18759800 ~ 18760297 (-) True G65102
TU87867 lncRNA downstream 6587 18711580 ~ 18753784 (-) True G65096
TU87812 lncRNA downstream 50935 18705140 ~ 18709436 (-) False G65064
TU87893 lncRNA upstream 17331 18833847 ~ 18835436 (-) True G65111
TU88004 lncRNA upstream 85111 18901627 ~ 18908694 (-) True G65185
TU88035 lncRNA upstream 241932 19058448 ~ 19144110 (-) True G65213
TU88044 lncRNA upstream 323081 19139597 ~ 19248687 (-) True G65222
TU88060 lncRNA upstream 432670 19249186 ~ 19250162 (-) True G65236
XM_007242359.3 mRNA downstream 41741 18717502 ~ 18718630 (-) True LOC103035404
XM_022671437.1 mRNA downstream 110070 18638307 ~ 18650301 (-) False LOC111192971
XM_022671436.1 mRNA downstream 110072 18638307 ~ 18650299 (-) False LOC111192971
XM_022671435.1 mRNA downstream 110073 18638307 ~ 18650298 (-) True LOC111192971
XM_022671444.1 mRNA downstream 130402 18627778 ~ 18629969 (-) False LOC111192976
XM_022671426.1 mRNA upstream 294617 19111133 ~ 19121460 (-) True LOC103035518
XM_022671457.1 mRNA upstream 489471 19305987 ~ 19319417 (-) True cdr2l
XM_022671463.1 mRNA upstream 592782 19409298 ~ 19515383 (-) True sema3c
XM_007232715.3 mRNA upstream 783732 19600248 ~ 19605725 (-) True ndufb2
XM_007232714.3 mRNA upstream 783732 19600248 ~ 19605718 (-) False ndufb2
TU87843 other downstream 110028 18643371 ~ 18650343 (-) False LOC111192971
TU87588 other downstream 829201 17928507 ~ 17931170 (-) True G64886
TU87275 other downstream 1162826 17586845 ~ 17597545 (-) False LOC111192911
TU88001 other upstream 81669 18898185 ~ 18919522 (-) False G65184
TU88002 other upstream 81669 18898185 ~ 19023658 (-) True G65184
TU88053 other upstream 463786 19280302 ~ 19284032 (-) True G65231
TU88123 other upstream 783698 19600214 ~ 19605682 (-) False ndufb2
TU88246 other upstream 981163 19797679 ~ 19799602 (-) False llph

Expression Profile