RNA id: TU87944


Basic Information

Item Value
RNA id TU87944
length 446
lncRNA type sense_over
GC content 0.45
exon number 2
gene id LOC103045528
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19223209 ~ 19278071 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCTTACGGCACCCAGCGCCGACCGGACCGGACCCACAAGACCCGCCGACCCGACCGGACCCCCAAACACCCGGACCTGCCGACGCGACCGGACCGGACCCACCGGACCCCCAAACACCTGGACTCACTGGCAGCATGCAGCTGCAGACTCCACACCTCACTCTGGTTCTGATCAGCCTGCTGACTCTCAATTGTGGCAGCTGGGCTCAGTCAGGtaagatttatttctatttattgatCTGCTGTGATTAGTTGTGATTTCTCTTATATTATCTACTATCAACTTTTTTCTTCCAGTCCATAATAAAACCTGATGAATCTCcaaaaatatcttatttttgGACAAAATGTAGAACAggcactttttattattattatattaggatttcatgatgaatggaccaatagaatcaCTCCAAATGTacttgaaataaataattaaaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87934 lncRNA upstream 61096 19162569 ~ 19162918 (+) True G65144
TU87905 lncRNA upstream 191263 18955573 ~ 19032751 (+) False G65122
TU87937 lncRNA downstream 22939 19247531 ~ 19250161 (+) False G65145
TU87938 lncRNA downstream 22939 19247531 ~ 19250161 (+) False G65145
TU87940 lncRNA downstream 22939 19247531 ~ 19250161 (+) True G65145
TU87942 lncRNA downstream 22939 19247531 ~ 19252415 (+) False G65145
XR_002650195.1 lncRNA downstream 25634 19250226 ~ 19252449 (+) True LOC111192982
XM_022671183.1 mRNA upstream 45427 19177002 ~ 19178587 (+) True LOC111192912
XM_022671417.1 mRNA upstream 204746 18990517 ~ 19019268 (+) True LOC111192965
XM_022671430.1 mRNA upstream 517468 18687257 ~ 18706546 (+) True LOC103035713
XM_022671432.1 mRNA upstream 517468 18687263 ~ 18706546 (+) False LOC103035713
XM_022671412.1 mRNA upstream 540898 18669432 ~ 18683116 (+) True LOC107197347
XM_022671456.1 mRNA downstream 43830 19268422 ~ 19271847 (+) True LOC103043906
XM_022671461.1 mRNA downstream 52412 19277004 ~ 19279517 (+) True LOC103044219
XM_007241718.3 mRNA downstream 55700 19280292 ~ 19284033 (+) False alyref
XM_022671459.1 mRNA downstream 62243 19286835 ~ 19305457 (+) True arhgdia
XM_022671460.1 mRNA downstream 62662 19287254 ~ 19305457 (+) False arhgdia
TU87714 other upstream 600515 18619860 ~ 18623499 (+) True G64990
TU87328 other upstream 1504586 17690209 ~ 17719428 (+) False G64698
TU86972 other upstream 2335819 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 2348073 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 2359560 16833296 ~ 16864454 (+) False LOC103030423
TU87957 other downstream 52210 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 55708 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 556071 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 1732543 20957135 ~ 20957635 (+) True G65565
TU88525 other downstream 1799583 21024175 ~ 21024574 (+) True G65575

Expression Profile