RNA id: TU88002


Basic Information

Item Value
RNA id TU88002
length 1838
RNA type TUCP
GC content 0.55
exon number 10
gene id G65184
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18898185 ~ 19023658 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacacacacacacacacacactatacacacacacacactatacacacacaatacacacacacacacacacacacacacaccctattTTCCTCCAGTTAACACGAATGGCCATCCCATTATGTGTGACGTCACAGCAGTGGGATATTTAGTCTGCGAGCCCGTCAGCTCAGACTGTACACGCGCGGAGCCGGAGCGGAGGGGAGCTGTCCGCGGTGCGGTGCTGAACCCCCGAGAACCGGGAGCTGTCCGCGGTGCTGAAGCTGAGAGCCGGGCACTGAAGCCGAGAAGCGGGCGCTCTCCGCGGTGCTGAACCTCCGAGAAGCGGGCGCTCTCCGCGGTGCTGAACCTCCGAGAAGCGGGCGCTGTCCGCGGTGCTGAAGCTCCGAGAAGCGGGCGCTGTCCGCGGTGCTGAAGCTGAGCGCTGTCCGCGGTGCTGAAGCTGAAAGCCGGGAGCGGTGGTGATGCTGAGCGCTGTCCGCGGTGCTGAAATCCGGCGCTGCTATCCTTCTGATTAAGTGCTGATTGAATGGGAACAACTGATGGCGCTGTGTTCCTGACATTTCCCAGCCTTTAGCATCTCCTCTCTGCACAGAGACCACCTGAGAGCTCAGTACCTTTCAGGAGGATTTCCCCTTAATCCATCACTCCAACACAACAACTTCAATCCCTTCAATCTTTTAGCTCAGTTTTTCGCTTCTCCTGCGGATGTTATACGACTTTTCGTAAGATGACTTCTGAAGCACTTTCCCTCGAACACTCAGCGGAGTTGTGCTTAATTTAAGCTTGTGCCGAATACATCATTACTGTGCTGCCTTATATACAGACTCTCTGGATAAAGAACGATGCTGCTGACAGATCGCATAACGTGACCTCacgttatataaatatatacatatatacatagatcaCCTGCGTGAAAATGGTGATCACTCTGAACAGCGATGGCATGGCGATGGTGAGGAGATGCCTCCTGACGTTCAAGCCCttcagGATTTTCGTGGCGGGGATCGGATTCTTCAGCCTCTGCTTCTTAATGACCTCTCTGGGGGGGCAGTTCTCGGCCAAGCGGCTCGGGGACTCACCCTTCACCATCCGGACTGAAGTGATTGGTGGGCTGGAGTCTCGTGGAGTGCTGAGGAAGATCAGTGATATGCTGGAGATCATCCTGAAGAGAATCGACGCTCTCGCCAAACTCAGCAACAGCACTAATAGCCACAGGTTGGAGGAGCTTAGCTCTGCTCtcgacagGTTTCAGCCGGTGGGTCTGGTGGAGAGGATTCAGGCGATTGCTCAGAATGTGTCGGAGATGGCGGTGCGGGTGGAGCAGATCCTACAGAAGAGGAGAGACGGGACTGCAGGACAGTGCGAAGTCCCGAAGGACCCCGGGTACCCGGACTGTGCCAGTAAAATTGATTGGATGAGAGCCAGGTGGACGTCGGACCCCTGCTACGCTTATTATGGGGTGGATGGATCCGACTGCTCCTTCCTCATCTACCTGAGTGAGGTGGAGTGGTTCTGCCCCCCACTGGCCTGGAGGAACCACAGCATCCTGACGGCAGGAAACAGCACACCTAAGAGACAGGCGGTGGTGCGCTCAGACCTGGGGCCGCTGCTGGAGCAGGTGGGTTCGGGGAAAGAGTCTCTGAGCTTCATGAGGAGGAGAATACGGCGGCTGGCGGTGCAGTGGGCCGTCGCTGCCCGAAGACTGAACCAGCGTCTGCACAACAAACAGAGGCAGGAGAAGAGGgtcttGGTTCATGTGGGGTTTCTAACAGAGGAGTCTGGTGATGTGTTCAGTCCTAAAGTGCTGAAGGGAGGACCGCTGGGGGAGATTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87890 lncRNA downstream 61753 18781871 ~ 18836432 (-) True G65108
TU87893 lncRNA downstream 62749 18833847 ~ 18835436 (-) True G65111
TU87885 lncRNA downstream 81669 18760371 ~ 18816516 (-) True G65103
TU87880 lncRNA downstream 137888 18759800 ~ 18760297 (-) True G65102
TU87867 lncRNA downstream 144401 18711580 ~ 18753784 (-) True G65096
TU88035 lncRNA upstream 34790 19058448 ~ 19144110 (-) True G65213
TU88044 lncRNA upstream 115939 19139597 ~ 19248687 (-) True G65222
TU88060 lncRNA upstream 225528 19249186 ~ 19250162 (-) True G65236
TU88055 lncRNA upstream 279236 19302894 ~ 19305411 (-) True G65232
TU88058 lncRNA upstream 282329 19305987 ~ 19370708 (-) False cdr2l
XM_007242359.3 mRNA downstream 179555 18717502 ~ 18718630 (-) True LOC103035404
XM_022671437.1 mRNA downstream 247884 18638307 ~ 18650301 (-) False LOC111192971
XM_022671436.1 mRNA downstream 247886 18638307 ~ 18650299 (-) False LOC111192971
XM_022671435.1 mRNA downstream 247887 18638307 ~ 18650298 (-) True LOC111192971
XM_022671444.1 mRNA downstream 268216 18627778 ~ 18629969 (-) False LOC111192976
XM_022671426.1 mRNA upstream 87475 19111133 ~ 19121460 (-) True LOC103035518
XM_022671457.1 mRNA upstream 282329 19305987 ~ 19319417 (-) True cdr2l
XM_022671463.1 mRNA upstream 385640 19409298 ~ 19515383 (-) True sema3c
XM_007232715.3 mRNA upstream 576590 19600248 ~ 19605725 (-) True ndufb2
XM_007232714.3 mRNA upstream 576590 19600248 ~ 19605718 (-) False ndufb2
TU87843 other downstream 247842 18643371 ~ 18650343 (-) False LOC111192971
TU87588 other downstream 967015 17928507 ~ 17931170 (-) True G64886
TU87275 other downstream 1300640 17586845 ~ 17597545 (-) False LOC111192911
TU88053 other upstream 256644 19280302 ~ 19284032 (-) True G65231
TU88123 other upstream 576556 19600214 ~ 19605682 (-) False ndufb2
TU88246 other upstream 774021 19797679 ~ 19799602 (-) False llph
TU88823 other upstream 2606300 21629958 ~ 21684828 (-) True G65803
TU88824 other upstream 2606463 21630121 ~ 21684828 (-) False G65803

Expression Profile