RNA id: TU88319


Basic Information

Item Value
RNA id TU88319
length 221
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id G65427
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 20222100 ~ 20222899 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCATcaagtatttattataaaaaaagtctGTCACAATATGTACCACTTTTAGTTTCATTCAAATTTCACAGTAATCTGTATTAGAACATTGtcaaatgatatatattttccaaaatacatttgttttcccatatataaaatattctatGTACTGCTTCAAAACAACTCAGGTTACATCTATATATCCTAATCTGGGATCACACAGGGGAGTATAGGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88292 lncRNA upstream 47357 20173370 ~ 20174743 (+) True G65403
TU88294 lncRNA upstream 54648 20167147 ~ 20167452 (+) True G65405
TU88293 lncRNA upstream 70543 20151233 ~ 20151557 (+) True G65404
TU88170 lncRNA upstream 415500 19804626 ~ 19806600 (+) True G65311
TU88168 lncRNA upstream 416998 19803175 ~ 19805102 (+) True G65310
TU88328 lncRNA downstream 11087 20233986 ~ 20234618 (+) True G65435
TU88336 lncRNA downstream 105980 20328879 ~ 20329924 (+) True G65442
TU88379 lncRNA downstream 277875 20500774 ~ 20501708 (+) True G65471
TU88374 lncRNA downstream 283808 20506707 ~ 20508287 (+) True G65468
TU88376 lncRNA downstream 283808 20506707 ~ 20507235 (+) False G65468
XM_022671483.1 mRNA upstream 48796 20155055 ~ 20173304 (+) True lin7a
XM_022671477.1 mRNA upstream 168052 19909173 ~ 20054048 (+) False ppfia2
XM_022671480.1 mRNA upstream 168052 19909175 ~ 20054048 (+) False ppfia2
XM_022671481.1 mRNA upstream 168052 19909176 ~ 20054048 (+) False ppfia2
XM_022671478.1 mRNA upstream 180406 19839195 ~ 20041694 (+) False ppfia2
XM_007232805.3 mRNA downstream 39681 20262580 ~ 20266197 (+) True rps16
XM_022671485.1 mRNA downstream 76803 20299702 ~ 20397903 (+) False ppp1r12a
XM_022671488.1 mRNA downstream 76803 20299702 ~ 20397903 (+) False ppp1r12a
XM_022671490.1 mRNA downstream 76803 20299702 ~ 20397903 (+) False ppp1r12a
XM_022671486.1 mRNA downstream 76804 20299703 ~ 20397967 (+) False ppp1r12a
XR_002650196.1 other upstream 427821 19780663 ~ 19794279 (+) False LOC103037311
TU87956 other upstream 881221 19280300 ~ 19340879 (+) True alyref
TU87957 other upstream 943285 19276802 ~ 19278815 (+) False LOC103044219
TU87714 other upstream 1598601 18619860 ~ 18623499 (+) True G64990
TU87328 other upstream 2502672 17690209 ~ 17719428 (+) False G64698
TU88511 other downstream 734236 20957135 ~ 20957635 (+) True G65565
TU88525 other downstream 801276 21024175 ~ 21024574 (+) True G65575
TU88777 other downstream 1406963 21629862 ~ 21684834 (+) False gen1
TU89211 other downstream 2716703 22939602 ~ 22949192 (+) False ccdc167
TU89229 other downstream 2776471 22999370 ~ 23003421 (+) True c7h11orf98

Expression Profile