RNA id: TU88374


Basic Information

Item Value
RNA id TU88374
length 1581
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G65468
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 20506707 ~ 20508447 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATATCGAGGACGAGAATGAGCAGCTGAAGCAGGAGAACAAGACCCTGCTGAAGGTGGTGGGTCAGCTGACGAGGTAGAACGTCCCGGAACCCAGAGAAAAACATGGCGTGTTTCTGCTTGGGCCTGTTCAACATAACCTGTCcgtgtctctgtctgtgaggaggatgaggatgatgatgatgctggtgTGGGGATGATTAAGATGAAGATGATGTGTGTATGATGTCAGCAGGCTATGATGttctatttaatgtaaatgtgtgtatacgTGTACGTACAGCGTTCAGGTTCGGAAGTTTACGAACTGTCACTACGTTAAAAATTGGATGTACCGTCTTGATTTCACCCGATTGTTTTTCTACGTATGCAGAAAGGGCCCTGACCTACGGCCGTGTGCAAAAGTATTAGTACCCCTCTACTTCAGTGTACTGTtgaaattattgtttttgaGCTTAAATAAACCACATTCACACTCTACCTAGGAAattctgcacattttaataGACAATTACTGTTAATGTACTGAATTTAATAGATAGTAcatgtacatttacattaaaaaaaatgtttcaataaataatataatgctttataaactgTATTAGAACtttaccaatagaaatgctttaaaattacttggaattaaatttttttacagtgacttTTTACATTCTATTGAGTTAagttaagaagttttttttcccttactgttttggagataaaaggttttttttgtatgaaagcatagatgtatataatacataagggacatattattacataattacCAATATATAATCCAAAAAAGACTACAATCAGAAATACTATTTGCAGCACCAGTCAAACATTTGTAcattgaatataaaataaaaaatatttgttgcatTTGTTGCATCCCAGTATTACTATTGGACAAAAATCCTTGTATGTCCATTTTGTCTTTTCCCCTAAATCTGTCTGACTAATTTTTTATATCGTATCAATATTTCAAGatgaatggatcaatagaaatactccaaaatgaaaattaagtcttaattacaattacatccAAAGAGAgacatatgtttttttccttcttctataaatgttatattatgGATATATGCATTTTTGGGATACAGTGACAATATACGCTTTTACAATATGAAATCCagcaaataatcaataattgtgAATTAAAATGTGCTGCTGTATATCACTGAAGCGTTTGCACACGGCTGTACAGTTATTCAGACTgtctgagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtctgtaAGATGAAAACCGAGTCATTGCCACCAAAATGAAAAGGAAATGGGTTTTTCTGGGCCAAAGTGGGTGTAATGCCCTGCACATTACCACTGAGCGTCCAGCACACACTGTGCTTTACCCCCCCACAGTACAGATGCATCGATGCAGAGCTCTGAGACCATCTCAAACTATTAATGTTGATTTGCATATTCTATTTGCAGATTATGATATGTAAACATTtcttaaatgtaacaaaattaaGATTAAATATGTCTGGATCAGATTTACagaatttatttacagaaaataaagaacattA

Function

GO:

id name namespace
GO:0036344 platelet morphogenesis biological_process
GO:0030220 platelet formation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88379 lncRNA upstream 4999 20500774 ~ 20501708 (+) True G65471
TU88336 lncRNA upstream 176783 20328879 ~ 20329924 (+) True G65442
TU88328 lncRNA upstream 272089 20233986 ~ 20234618 (+) True G65435
TU88319 lncRNA upstream 283808 20222100 ~ 20222899 (+) True G65427
TU88292 lncRNA upstream 331964 20173370 ~ 20174743 (+) True G65403
TU88392 lncRNA downstream 42906 20551193 ~ 20552933 (+) True G65476
TU88386 lncRNA downstream 44177 20552464 ~ 20554372 (+) False G65476
TU88398 lncRNA downstream 59076 20567363 ~ 20569105 (+) True G65482
TU88410 lncRNA downstream 236689 20744976 ~ 20750081 (+) True G65494
XR_002650198.1 lncRNA downstream 323733 20832020 ~ 20834853 (+) True LOC111192987
XM_022671492.1 mRNA upstream 9046 20417512 ~ 20497661 (+) True pawr
XM_022671491.1 mRNA upstream 108740 20299703 ~ 20397967 (+) False ppp1r12a
XM_022671495.1 mRNA downstream 85379 20593666 ~ 20595301 (+) True LOC111192985
XM_022671510.1 mRNA downstream 902562 21410849 ~ 21438210 (+) True tmem214
XM_022671511.1 mRNA downstream 902562 21410849 ~ 21438210 (+) False tmem214
XM_022671504.1 mRNA downstream 932122 21440409 ~ 21547440 (+) False agbl5
XM_022671508.1 mRNA downstream 932122 21440409 ~ 21547440 (+) False agbl5
XR_002650196.1 other upstream 712428 19780663 ~ 19794279 (+) False LOC103037311
TU87956 other upstream 1165828 19280300 ~ 19340879 (+) True alyref
TU87957 other upstream 1227892 19276802 ~ 19278815 (+) False LOC103044219
TU87714 other upstream 1883208 18619860 ~ 18623499 (+) True G64990
TU87328 other upstream 2787279 17690209 ~ 17719428 (+) False G64698
TU88511 other downstream 448848 20957135 ~ 20957635 (+) True G65565
TU88525 other downstream 515888 21024175 ~ 21024574 (+) True G65575
TU88777 other downstream 1121575 21629862 ~ 21684834 (+) False gen1
TU89211 other downstream 2431315 22939602 ~ 22949192 (+) False ccdc167
TU89229 other downstream 2491083 22999370 ~ 23003421 (+) True c7h11orf98

Expression Profile