RNA id: TU88398


Basic Information

Item Value
RNA id TU88398
length 334
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G65482
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 20567363 ~ 20569105 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTAGCTGTGTTTTAGCTAACCCTGTTTTAGCTAGCTGTGTTTTAGCTAGTTGTGTTTTAGCTAACCCTGTTTTAGCTAGCCGTGTTTTAGCCAGTTGTGTTTTAGCTAACCCTGTTTTACCTAGctgtgttttagctagctgtGATTTAGCTAGCTGTGTTTTAGCTAGCCCTGTTTTAGCTAGCTCTGTTTTAgctagccgtgttttagctAGCTCTGTTTTAGTTAGTTGTGTTTTAGCTAACCCTGTTTTAgctagccgtgttttagctAGCTGTGTTTTAGCTAGTTGTGTTTTAGCTAGTTGTGTTTTAGCTAACCCTGTTTTAGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88386 lncRNA upstream 12991 20552464 ~ 20554372 (+) False G65476
TU88392 lncRNA upstream 14430 20551193 ~ 20552933 (+) True G65476
TU88375 lncRNA upstream 58916 20507375 ~ 20508447 (+) False G65468
TU88374 lncRNA upstream 59076 20506707 ~ 20508287 (+) True G65468
TU88376 lncRNA upstream 60128 20506707 ~ 20507235 (+) False G65468
TU88410 lncRNA downstream 175871 20744976 ~ 20750081 (+) True G65494
XR_002650198.1 lncRNA downstream 262915 20832020 ~ 20834853 (+) True LOC111192987
TU88510 lncRNA downstream 387746 20956851 ~ 20957079 (+) True G65564
XR_002650155.1 lncRNA downstream 388598 20957703 ~ 20958378 (+) True LOC111192878
TU88526 lncRNA downstream 456697 21025802 ~ 21026070 (+) True G65576
XM_022671492.1 mRNA upstream 69702 20417512 ~ 20497661 (+) True pawr
XM_022671491.1 mRNA upstream 169396 20299703 ~ 20397967 (+) False ppp1r12a
XM_022671495.1 mRNA downstream 24561 20593666 ~ 20595301 (+) True LOC111192985
XM_022671510.1 mRNA downstream 841744 21410849 ~ 21438210 (+) True tmem214
XM_022671511.1 mRNA downstream 841744 21410849 ~ 21438210 (+) False tmem214
XM_022671504.1 mRNA downstream 871304 21440409 ~ 21547440 (+) False agbl5
XM_022671508.1 mRNA downstream 871304 21440409 ~ 21547440 (+) False agbl5
XR_002650196.1 other upstream 773084 19780663 ~ 19794279 (+) False LOC103037311
TU87956 other upstream 1226484 19280300 ~ 19340879 (+) True alyref
TU87957 other upstream 1288548 19276802 ~ 19278815 (+) False LOC103044219
TU87714 other upstream 1943864 18619860 ~ 18623499 (+) True G64990
TU87328 other upstream 2847935 17690209 ~ 17719428 (+) False G64698
TU88511 other downstream 388030 20957135 ~ 20957635 (+) True G65565
TU88525 other downstream 455070 21024175 ~ 21024574 (+) True G65575
TU88777 other downstream 1060757 21629862 ~ 21684834 (+) False gen1
TU89211 other downstream 2370497 22939602 ~ 22949192 (+) False ccdc167
TU89229 other downstream 2430265 22999370 ~ 23003421 (+) True c7h11orf98

Expression Profile