RNA id: TU88510


Basic Information

Item Value
RNA id TU88510
length 229
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G65564
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 20956851 ~ 20957079 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTAATGcattagaacacagtacagttgTTTGGTAGTGGTGAAGTGTCGCAGGttcgagagggagagagtggaaCCAGGACCTGGTGGTGGTGATAGAGGACCTAGAGACCAGACGTCGGACTGCAGACGGAGTTGCAGAGACGGTGGAGTGGAGGACTCATCGCTGCTGGCTGCTGCTGTTCATCTTCCTGGACTGATCCAGAAACCTTATCCTTTATCTGGCAAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650198.1 lncRNA upstream 121998 20832020 ~ 20834853 (+) True LOC111192987
TU88410 lncRNA upstream 206770 20744976 ~ 20750081 (+) True G65494
TU88398 lncRNA upstream 387746 20567363 ~ 20569105 (+) True G65482
TU88386 lncRNA upstream 402479 20552464 ~ 20554372 (+) False G65476
TU88392 lncRNA upstream 403918 20551193 ~ 20552933 (+) True G65476
XR_002650155.1 lncRNA downstream 624 20957703 ~ 20958378 (+) True LOC111192878
TU88526 lncRNA downstream 68723 21025802 ~ 21026070 (+) True G65576
TU88539 lncRNA downstream 258856 21215935 ~ 21217263 (+) True G65585
TU88590 lncRNA downstream 402291 21359370 ~ 21359667 (+) True G65626
TU88597 lncRNA downstream 413971 21371050 ~ 21372121 (+) True G65630
XM_022671495.1 mRNA upstream 361550 20593666 ~ 20595301 (+) True LOC111192985
XM_022671492.1 mRNA upstream 459190 20417512 ~ 20497661 (+) True pawr
XM_022671489.1 mRNA upstream 558884 20299704 ~ 20397967 (+) False ppp1r12a
XM_022671484.1 mRNA upstream 558948 20299703 ~ 20397903 (+) True ppp1r12a
XM_022671510.1 mRNA downstream 453770 21410849 ~ 21438210 (+) True tmem214
XM_022671511.1 mRNA downstream 453770 21410849 ~ 21438210 (+) False tmem214
XM_022671504.1 mRNA downstream 483330 21440409 ~ 21547440 (+) False agbl5
XM_022671508.1 mRNA downstream 483330 21440409 ~ 21547440 (+) False agbl5
XM_022671506.1 mRNA downstream 483355 21440434 ~ 21547440 (+) False agbl5
XR_002650196.1 other upstream 1162572 19780663 ~ 19794279 (+) False LOC103037311
TU87956 other upstream 1615972 19280300 ~ 19340879 (+) True alyref
TU87957 other upstream 1678036 19276802 ~ 19278815 (+) False LOC103044219
TU87714 other upstream 2333352 18619860 ~ 18623499 (+) True G64990
TU87328 other upstream 3237423 17690209 ~ 17719428 (+) False G64698
TU88511 other downstream 56 20957135 ~ 20957635 (+) True G65565
TU88525 other downstream 67096 21024175 ~ 21024574 (+) True G65575
TU88777 other downstream 672783 21629862 ~ 21684834 (+) False gen1
TU89211 other downstream 1982523 22939602 ~ 22949192 (+) False ccdc167
TU89229 other downstream 2042291 22999370 ~ 23003421 (+) True c7h11orf98

Expression Profile