RNA id: TU88615


Basic Information

Item Value
RNA id TU88615
length 1857
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G65640
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21550705 ~ 21552600 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgctcacgacttagtatgtggtgctcacgacttagtatgtggtgctcacgacttagtatgtggtgctcacgacttagtaagtggtgctcatgACTTAGTAAGcggtgctcaccactttctacataaaaaaaaaataagtatttaaattaatttatcaacatcattattgttattattacatttgAACACTTCTGTACTCTAATTTGACTTCAGAAGACTGACATGTGAACACAAGTTCCTCCAAAACAAATTATGAAGCTTGAGTAGAATACAGTTTAAAGTGACAGATTATGAGgtagagtacttttaaaacatgcattataTTGTGGTCTACTTTTAGAATGGATCTGGAGACTTTAGCAAGGACTTTGATAGACTCTTGAATAAACAGGAAAAAGCTAAGTTTGTTGTTCTGATATTTTAATGTTCTAAGTAGTTCCGCATCATTAGCAGGTAACCAGTAAAATCATAATGGAGATGACAGAGCAGAAACCCTGTTTTTACATGgaatagatttttttgggttgaTGGATgtagaataaatttacactgttatataagctgcacacagactacttttcattgtgtcaaagtgtcattttgtcagtgttgtcccatgaaaagatatacttaaatatctgcagaaatgtgaggggtgtacatACTTTTGTGATACATTGTACctattactttttctttttaactgtcaATGTAAATTTCTTCCAAGAAATGATGTGGAAAATGGATAATCAGTTTATAAATTTTGAAACCTGGAGGCGTCAAGTGGTTCAGCGGTCTAAATGGCTGCCACAATTGTTTATACAGCTTGCCATTTGCTGCCAGAGTGGGCCAAATGGGTGGGTAGAGGGTGCTCTTttcccttatcactcctagggtaaagtcaatcagcacaaggtgtctgtgtgatttctttgttttttaattttaataaattttcaaaactctcaagaaaacttttttcacatggtcataatagggtattttgtgtagaaagagattaatttaatacaatttggaaTAAGGCTGTAACGTAACAAAAGCGCTGCGAAGACTTTCCAGATGCACTgtactttcctccgagtgtgctacATACAGCAGCAGTATGACAGggggtggtggctgacttcaatTGCTGACTCATTGAAAACTTGCCTTATTATTTAACCCATTCTTTATTTTCTATGGGTTAGACTGTAATTCCATTGTGGGCAGTTTACTTATGGAAGGATATCTAAAATGGCTTTAGCCTTAATGTAGTTTCTGATGTTCTACTTTAGAATGAGGTCAAATAATCATCTCATGCTTTGCCACTCTCAGCACTGTACCATTAAAAGTGCTTCACCTTTATCCTCCGTATAAGGCAGATGGACACCacatacactgatcagccattaCAATAAACCACTCCTTGTGCTGCAACTACAGATTTGAGCATTCGAGGCATGGCAGATAGTAacagatatttaatattttttaatttaatttgtcttgtaagttgtgaggtgctgtCTTTTAAGCATTGCATCAGTGAGCCTTAGGTGCCCAGGTGTTTAGGAGGTGTCCTAGTAATCATAATTTGTCACTCACAACCTCCAGGTGTCCTAGTAATCATAATTTGTCACTCACATCCTCTTACGCTTGATGACCTTTAAATACTGCCTAATATGCCTCTACACTTAACAGACCTCTctgtagaagaaaaaaaggactATTTTTACCTTATTAGAGGTGCTAATGTTGTTGCTGATCCTGTATGTGTAGAATTACAGTGGTAtgtaaaagtttgggcacccctaaaATTTTTCATaactttataaatcattggttgttcggct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88617 lncRNA upstream 1543 21505650 ~ 21549162 (+) False agbl5
TU88647 lncRNA upstream 51846 21496539 ~ 21498859 (+) True G65658
TU88633 lncRNA upstream 63819 21483107 ~ 21486886 (+) False G65654
TU88635 lncRNA upstream 63819 21483107 ~ 21486886 (+) False G65654
TU88637 lncRNA upstream 63819 21485360 ~ 21486886 (+) False G65654
TU88663 lncRNA downstream 15467 21568067 ~ 21569190 (+) True G65672
TU88668 lncRNA downstream 21451 21574051 ~ 21574272 (+) True G65676
TU88754 lncRNA downstream 35592 21588192 ~ 21588864 (+) True G65744
TU88767 lncRNA downstream 46889 21599489 ~ 21599843 (+) True G65752
TU88774 lncRNA downstream 62107 21614707 ~ 21615121 (+) True G65759
XM_022671504.1 mRNA upstream 3265 21440409 ~ 21547440 (+) False agbl5
XM_022671508.1 mRNA upstream 3265 21440409 ~ 21547440 (+) False agbl5
XM_022671506.1 mRNA upstream 3265 21440434 ~ 21547440 (+) False agbl5
XM_022671505.1 mRNA upstream 3265 21440676 ~ 21547440 (+) False agbl5
XM_022671507.1 mRNA upstream 3265 21454492 ~ 21547440 (+) False agbl5
XM_022671515.1 mRNA downstream 77187 21629787 ~ 21715437 (+) True gen1
XM_022671516.1 mRNA downstream 77187 21629787 ~ 21715437 (+) False gen1
XM_022671517.1 mRNA downstream 77440 21630040 ~ 21715437 (+) False gen1
XM_022671518.1 mRNA downstream 86959 21639559 ~ 21715437 (+) False gen1
XM_022671519.1 mRNA downstream 162852 21715452 ~ 21716948 (+) True msgn1
TU88525 other upstream 526131 21024175 ~ 21024574 (+) True G65575
TU88511 other upstream 593070 20957135 ~ 20957635 (+) True G65565
XR_002650196.1 other upstream 1756426 19780663 ~ 19794279 (+) False LOC103037311
TU87956 other upstream 2209826 19280300 ~ 19340879 (+) True alyref
TU87957 other upstream 2271890 19276802 ~ 19278815 (+) False LOC103044219
TU88777 other downstream 77262 21629862 ~ 21684834 (+) False gen1
TU89211 other downstream 1387002 22939602 ~ 22949192 (+) False ccdc167
TU89229 other downstream 1446770 22999370 ~ 23003421 (+) True c7h11orf98
TU89299 other downstream 1578494 23131094 ~ 23137954 (+) False crebl2
TU89300 other downstream 1578494 23131094 ~ 23137954 (+) False crebl2

Expression Profile