RNA id: XM_022671506.1


Basic Information

Item Value
RNA id XM_022671506.1
length 3983
RNA type mRNA
GC content 0.45
exon number 12
gene id agbl5
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21440409 ~ 21549162 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCGCTACGCGGAGACGGACTGTAGAATGTGTTTGTTTGGGGTTAAACCTCCACTGCACTGCTGTTTGCAGGAGCAGCACTACAGTGTTGTTTTCCTGAGAAGACGTCGAACTCGACGATGCGTTTTTGTACGTCTGTACTGTATTCCCTGCTGTTCATACGCGGAGCTGTCGACAGCCGGTCCTGCAGGTCAGGTCATTGTGTTTGGGTACCATGGGACTCGGTAAAACAGTGATGTGAGTTGCTAGGTACAGCATAGCGATATTCTGAAGCCGGAGCCCTGATCATGGAGGTCCACTTTGGCCGTGTGGTGTTTAGCTCACGGTTTGACTCTGGAAACCTGGGGAGAGTGGACAAAGTAAAACAGTCAGAAGCTAATAGCTCAACTGGCAACTCTCTGCCTAATGCTGACCATGAGTTCAATGTTTGGACCAAACCAGACTGTGCGGACACAGAGTTTGAGAATGGAAACCGGTCGTGGTTCTACTTCAGTGTGCGTGGAGTGTTGCCTGGTAAACTTCTAAAGATCAATGTGATGAACATGAATAAGCAGAGTAAGCTTTATTCCCAGGGCATGGCTCCGATTGTTCGAACCTTACCGGTCAAAACGCGTTGGGAGAGAGTGCGGGATCGTCCCACATTCAAGATGTCTGACAGTCACTTCACTTTGTCATTTGTACATCGTGTGCTGGACGTGAGAAGAGCCACCACATACTTCGCTTTTTGCTATCCTTTTTCATACACTGATTGCCAAGACATGCTTCTGCAGGTAGACCAGAGACTTCTCAGCAACACTTATGCACTGGGGCCCTGCAGTCCAGCAGACAGTCTGTATTATCACCGTGAGTTGCTGTGTAACTCCCTGGATGGAAGGAGAGTGGACCTGCTGACTGTGACCTCCTGCCATGGCATGCTGGAGGAGAGAGAGCCTAGACTGGACAAGCTTTTCCCTGACCACAGCACACCAAGGCCACACTGCTTTGCTGGCAAACGGgTTTTTTTCCTCACCAGTAGGGTGCACCCTGGTGAGACGCCATCCAGCTTTGTGTTCAATGGTTTCCTGCACTTCATTCTGAATCAGGAAGATCCTCGTGCCCTGGCACTGcgcaaaatgtttgtttttaagcttATTCCAATGCTCAACCCTGACGGAGTCAGCAGAGGTCACTATAGGACGGACTCTCAGGGTGTGAATCTGAACCGGCAGTATGTCAGCCCAAGCGCAGAGTTGCATCCTTCTATTTATGGAGCTAAATCTCTCCTTCTGTACCATCACCAGCACAATCGTCTCAACCCGAGTGCTCCTTCAGCCCTCAAAACCTCCAACCAGTCAAACACCTCTCTCCCACCCCTGACCACAACCTGTGAACTAGAGCACTACCTTAATTGTCGTAACGAGGCAGAGTGGATGGAGGGTCCAACCCTTGACTTGTTGGAAATACCCATGCAAATGGAGGACACCTGGGAGAAGTCTGGAGTTGAAGGAGGGGTGGGGCCCTGTGATGAGAATAAAGCTGTACCATGCTGTTGTGAAGCTCCTTGTTTTAACTCCAACCTCACAGAGAAAATCACACCACAGGAGAGTGGAGTGGCCTATTACATCGACCTACACGGGCATGCATCCAAAAGAGGATGCTTTATGTATGGGAACAACTTAAGTGATGTAAATCAGCAGGTGGAAAACATGATGTACCCAAAACTGATCTCTTTAAACTGTGCCCATTTCGACTTCCTTGGCTGTAATTTTTCAGAGAAGAACATGTATGCACGGGACAGGCGTGATGGTCAGTCTAAAGAGGGCAGTGGACGTGTAGCCATTCACAAAGCCATCGGCCTGATTCACAGTTACACATTGGAATGTAACTATAATACTGGCCACTCAGTCAACACCATCCCTCCTGCCTGCCACGACAACGGCCGAGctactccacctcctcctcctgcctTCCCTCCAAAATACACACCAGAGGTATATGAACAGGTGGGGCGTGCAGTTGCTATAGCAGCACTAGACATGGCCGAGTGCAACCCTTGGCCACGGCTGGTCCTCTCTGAGCACAAGAACTTGATGAATCTGCGTGCCCGCATGCTTAAACATGTGCGTAACAGCAAGGGCTTCAGCACAAGGATTCGTAAAAATATCAACAAGTCCTCCAGCACCCCTAAACCATCTGGTATGAGCAATTCTGTTCCGGGGAATTGTCTGGGTCGGAGCCGCAGCAATAGCAGTGGTAACTGCACTGTTGCTGGGAGCCTGCAGAAATCACCACAACTGAAAAGTTCACCCAGCTTCACATTCGGATGGAGCAACTCTGTAAACACCCCACTCACTCACAGGCCTACCTACAAAACACTGGGACCTGTCCGAGGCGATACCTTTTCTAGATGTCTTTCTGTAGAGTGCAAAGCACTGGAGAAGAGACTGTCACCAGGAAACAGCCAGGTCACTCCATCTCACACCGCTCTCtatccttcctcctcctcctcatcttctTCCTCCTCATTCTCCTTGTCCCCCACATCCAGCTCGTTGAGGTGTGTTGCAGACACCAATGCTCCAGGCAGTTCTGTCAGTACAGCAGGTCTGTACTCGCTACAGCCTCCCAGCCTGGCCCAACTGCTTCCCTCCCCGCAGGCCATGCCCCATAATGGCCTGCCCACTGAGCCACTGCATGAATATTCCAGACACCATGCCACACAGAAAGGCCCACCACAAGCCACACAGCCACAGCAAGAATGACTGTGCATTCTCTATTTATGTGATTGTGTTATGTACATGTGCGCATtagagagaatcagagagaaCAAGGGAGGCTGACATGGCAAACAAGTAGTAATTTGGTGTTGGGGTTGCAGGTgggtgttttattttaatttgtatgactgttaatatttttttattgtttttaatttaatttaaatgtatctgACTGAAAGGGCAGAAAGAGTCACTGGCATTAAATGCCAAATGAACAccattttattttcactcactACAGTAGTGGTTTTGATTATTTAGCCTTATTGCACTTTGACCATGTTATTATAGAATGGAATTTACACTTAACACCTATGACTGAATTTACTGGGAACAAGAAAgagttgttgtgtgtgtgcatctatTTCTGTGTGCCATTTTTGTTCAGAtacttttttctgcctttttgcacttttgtcttttttttgttgtacttctgtcttagctctgtactgaacaaaaaataacattgataGACCTATTCATATAGAAATACATGAGTAAAATCCTCTGTAAACTTGCTCTGTATATCctctgtaaacttttttttgacaCCCTCTTGTCACCTGTCTGAATACTGGAGAAGACAAATGAAGCCACATTTTGTAGTGACATCACTGTGGCCAGACCCACTGAGCATACAAGCACATCTgtgtaattaataatttattacttaatgtatttattacattttgtaaaacactgtgtagaaataataaaatatgaaacaaaaaaactttcatGATTgtagaacataaaataaatcgCTTATGGGCAAATAATAAAGtgatgaataaaataacaaatgaatAACACACAAGGCTTCCAATTTTAgaaatgcaatgtttttttgcaaGCACTGTCATTGGCTCATcagtttattaaagaaaatagaCCAGCGGCCCCATTTCCCCAAATCTGGAATcagcatatttttatttcacaattaTTTGGTATTTTCTGTTGCTCAATCACATAAAAtcccaataaaatacatttaagtttgtgggtGTAACATggcaaaatgtggaaaagttcaagggttaTGATTACTTTTtcatggtactgtatatatatattttgtttagatggatttttgtcttgttttgtaaAACTGTATGTTTGGAGTGCTTGTTCTGCTAAAAATTTGGCATTCTTTTGGAGCTGCTGCTTGTtgcttgaaatgtttttttttttttttttgcataaatctGATTGAACCCAA

Function

GO:

id name namespace
GO:0035611 protein branching point deglutamylation biological_process
GO:0006508 proteolysis biological_process
GO:0009790 embryo development biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0015631 tubulin binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88607 lncRNA upstream 12669 21421805 ~ 21427765 (+) True G65638
TU88606 lncRNA upstream 34590 21405635 ~ 21405844 (+) True G65637
TU88602 lncRNA upstream 56045 21378768 ~ 21384389 (+) True G65634
TU88601 lncRNA upstream 62658 21377246 ~ 21377776 (+) True G65633
TU88597 lncRNA upstream 68313 21371050 ~ 21372121 (+) True G65630
TU88615 lncRNA downstream 3265 21550705 ~ 21552600 (+) True G65640
TU88663 lncRNA downstream 20627 21568067 ~ 21569190 (+) True G65672
TU88668 lncRNA downstream 26611 21574051 ~ 21574272 (+) True G65676
TU88754 lncRNA downstream 40752 21588192 ~ 21588864 (+) True G65744
TU88767 lncRNA downstream 52049 21599489 ~ 21599843 (+) True G65752
XM_022671510.1 mRNA upstream 2224 21410849 ~ 21438210 (+) True tmem214
XM_022671511.1 mRNA upstream 2224 21410849 ~ 21438210 (+) False tmem214
XM_022671495.1 mRNA upstream 845133 20593666 ~ 20595301 (+) True LOC111192985
XM_022671492.1 mRNA upstream 942773 20417512 ~ 20497661 (+) True pawr
XM_022671489.1 mRNA upstream 1042467 20299704 ~ 20397967 (+) False ppp1r12a
XM_022671515.1 mRNA downstream 82347 21629787 ~ 21715437 (+) True gen1
XM_022671516.1 mRNA downstream 82347 21629787 ~ 21715437 (+) False gen1
XM_022671517.1 mRNA downstream 82600 21630040 ~ 21715437 (+) False gen1
XM_022671518.1 mRNA downstream 92119 21639559 ~ 21715437 (+) False gen1
XM_022671519.1 mRNA downstream 168012 21715452 ~ 21716948 (+) True msgn1
TU88525 other upstream 415860 21024175 ~ 21024574 (+) True G65575
TU88511 other upstream 482799 20957135 ~ 20957635 (+) True G65565
XR_002650196.1 other upstream 1646155 19780663 ~ 19794279 (+) False LOC103037311
TU87956 other upstream 2099555 19280300 ~ 19340879 (+) True alyref
TU87957 other upstream 2161619 19276802 ~ 19278815 (+) False LOC103044219
TU88777 other downstream 82422 21629862 ~ 21684834 (+) False gen1
TU89211 other downstream 1392162 22939602 ~ 22949192 (+) False ccdc167
TU89229 other downstream 1451930 22999370 ~ 23003421 (+) True c7h11orf98
TU89299 other downstream 1583654 23131094 ~ 23137954 (+) False crebl2
TU89300 other downstream 1583654 23131094 ~ 23137954 (+) False crebl2

Expression Profile