RNA id: TU88621


Basic Information

Item Value
RNA id TU88621
length 604
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G65646
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21455758 ~ 21498546 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatcgtggGAGATGGCTTTATGCCTCACTTATGTACAGCCCAGTGTGTTATTGTTTGTTGTAATGTTTACATGTTTGTAAAACCTTAGCAGCGAGGTCGTCAGTTGTACATGGTTAAAACCCTTCGCTACGTAGAATGCCCCCTTGCTCTGAAGCAATTGATGTTGTCATAAAGCTCCATTAGCActttgttagcattagcatctggTGCTGTGTAAATAGCAATGATGAACACCACAGATGCATGAATCTGAACCCATACCAAAAAGGAGCAGTAACAGCATACAAGAAACTAATTTAAATGCCAAGGATGTATCCAAATttcaaaattaataaacagctcaagaaaaataaagagaacacCTAAACAACAGAATGTAACTCCAAGTCAACCACACTTCTGTGACACAACCTGTCCAGTTAGGAAGCAACATTGATTGTGAATCagtttcacctgctgttgtgcaaatagaACAGACAACAGATAGAAATGagaggcaattagcaagacaaccCCTATAAAATGATTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88607 lncRNA upstream 27993 21421805 ~ 21427765 (+) True G65638
TU88606 lncRNA upstream 49914 21405635 ~ 21405844 (+) True G65637
TU88602 lncRNA upstream 71369 21378768 ~ 21384389 (+) True G65634
TU88601 lncRNA upstream 77982 21377246 ~ 21377776 (+) True G65633
TU88597 lncRNA upstream 83637 21371050 ~ 21372121 (+) True G65630
TU88617 lncRNA downstream 7104 21505650 ~ 21549162 (+) False agbl5
TU88615 lncRNA downstream 52159 21550705 ~ 21552600 (+) True G65640
TU88663 lncRNA downstream 69521 21568067 ~ 21569190 (+) True G65672
TU88668 lncRNA downstream 75505 21574051 ~ 21574272 (+) True G65676
TU88754 lncRNA downstream 89646 21588192 ~ 21588864 (+) True G65744
XM_022671510.1 mRNA upstream 17548 21410849 ~ 21438210 (+) True tmem214
XM_022671511.1 mRNA upstream 17548 21410849 ~ 21438210 (+) False tmem214
XM_022671495.1 mRNA upstream 860457 20593666 ~ 20595301 (+) True LOC111192985
XM_022671492.1 mRNA upstream 958097 20417512 ~ 20497661 (+) True pawr
XM_022671489.1 mRNA upstream 1057791 20299704 ~ 20397967 (+) False ppp1r12a
XM_022671509.1 mRNA downstream 7327 21505873 ~ 21547440 (+) True agbl5
XM_022671515.1 mRNA downstream 131241 21629787 ~ 21715437 (+) True gen1
XM_022671516.1 mRNA downstream 131241 21629787 ~ 21715437 (+) False gen1
XM_022671517.1 mRNA downstream 131494 21630040 ~ 21715437 (+) False gen1
XM_022671518.1 mRNA downstream 141013 21639559 ~ 21715437 (+) False gen1
TU88525 other upstream 431184 21024175 ~ 21024574 (+) True G65575
TU88511 other upstream 498123 20957135 ~ 20957635 (+) True G65565
XR_002650196.1 other upstream 1661479 19780663 ~ 19794279 (+) False LOC103037311
TU87956 other upstream 2114879 19280300 ~ 19340879 (+) True alyref
TU87957 other upstream 2176943 19276802 ~ 19278815 (+) False LOC103044219
TU88777 other downstream 131316 21629862 ~ 21684834 (+) False gen1
TU89211 other downstream 1441056 22939602 ~ 22949192 (+) False ccdc167
TU89229 other downstream 1500824 22999370 ~ 23003421 (+) True c7h11orf98
TU89299 other downstream 1632548 23131094 ~ 23137954 (+) False crebl2
TU89300 other downstream 1632548 23131094 ~ 23137954 (+) False crebl2

Expression Profile