RNA id: TU88774


Basic Information

Item Value
RNA id TU88774
length 415
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G65759
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21614707 ~ 21615121 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCcgttcccatgtctagtcctgtCCAGTCACCCGTcatgtctcacgtccagtcatcgtcccctgtccagtttcctgtccagtctcctgtctcgcccaatgtccagtctccagtcACGTCCCCGGTTCAGTCTCCtttctctgtccagtctcctgtccggTCTGCTGTCCAGTCTCCAGTTCTGCCCCATGTTAAGTCTCAGGTCTCGTCTCTTGTGtttcccggcctctccccgccgccggcccccggggttcgtttttacgcgcctcgggagctgcgcgtttagggaggggcttctgttacgccctcgctatgttttcctgtgttttccccgtttcctagtgtgtttctcttgtacttttccattacgtgtgtgtaatttgtagctccgcccctcgttacctgtctccccagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88767 lncRNA upstream 14864 21599489 ~ 21599843 (+) True G65752
TU88754 lncRNA upstream 25843 21588192 ~ 21588864 (+) True G65744
TU88668 lncRNA upstream 40435 21574051 ~ 21574272 (+) True G65676
TU88663 lncRNA upstream 45517 21568067 ~ 21569190 (+) True G65672
TU88615 lncRNA upstream 62107 21550705 ~ 21552600 (+) True G65640
TU88782 lncRNA downstream 30295 21645416 ~ 21645679 (+) True G65764
TU88800 lncRNA downstream 90214 21705335 ~ 21709756 (+) True G65781
TU88853 lncRNA downstream 157332 21772453 ~ 21772747 (+) True G65827
TU88856 lncRNA downstream 175464 21790585 ~ 21790944 (+) True G65830
TU88857 lncRNA downstream 190191 21805312 ~ 21806045 (+) True G65831
XM_022671506.1 mRNA upstream 67267 21440434 ~ 21547440 (+) False agbl5
XM_022671515.1 mRNA downstream 14666 21629787 ~ 21715437 (+) True gen1
XM_022671516.1 mRNA downstream 14666 21629787 ~ 21715437 (+) False gen1
XM_022671517.1 mRNA downstream 14919 21630040 ~ 21715437 (+) False gen1
XM_022671518.1 mRNA downstream 24438 21639559 ~ 21715437 (+) False gen1
XM_022671519.1 mRNA downstream 100331 21715452 ~ 21716948 (+) True msgn1
TU88525 other upstream 590133 21024175 ~ 21024574 (+) True G65575
TU88511 other upstream 657072 20957135 ~ 20957635 (+) True G65565
XR_002650196.1 other upstream 1820428 19780663 ~ 19794279 (+) False LOC103037311
TU87956 other upstream 2273828 19280300 ~ 19340879 (+) True alyref
TU87957 other upstream 2335892 19276802 ~ 19278815 (+) False LOC103044219
TU88777 other downstream 14741 21629862 ~ 21684834 (+) False gen1
TU89211 other downstream 1324481 22939602 ~ 22949192 (+) False ccdc167
TU89229 other downstream 1384249 22999370 ~ 23003421 (+) True c7h11orf98
TU89299 other downstream 1515973 23131094 ~ 23137954 (+) False crebl2
TU89300 other downstream 1515973 23131094 ~ 23137954 (+) False crebl2

Expression Profile