RNA id: TU88853


Basic Information

Item Value
RNA id TU88853
length 295
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G65827
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21772453 ~ 21772747 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taagtgggcggagcttagtggttctattgacctttttgatttGCCATTAACCAAGGAATCATATAATGCAAGAATTTTTGCTCTAGTTATCAGGGCGTAGGAGTTACGAGGCCAAACGCGTTGACCTTCgccatagcgcccccttgaggccgatcgggctcatcttttgaatctgagtagcggtgagaagtactaccatatgaccaagtctcagccctgtaggccttacggtttcttctgcccaatcacttctatggcagaaaaagaataagaactataataataataataataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88800 lncRNA upstream 62697 21705335 ~ 21709756 (+) True G65781
TU88782 lncRNA upstream 126774 21645416 ~ 21645679 (+) True G65764
TU88774 lncRNA upstream 157332 21614707 ~ 21615121 (+) True G65759
TU88767 lncRNA upstream 172610 21599489 ~ 21599843 (+) True G65752
TU88754 lncRNA upstream 183589 21588192 ~ 21588864 (+) True G65744
TU88856 lncRNA downstream 17838 21790585 ~ 21790944 (+) True G65830
TU88857 lncRNA downstream 32565 21805312 ~ 21806045 (+) True G65831
TU88858 lncRNA downstream 33417 21806164 ~ 21807211 (+) True G65832
TU88866 lncRNA downstream 38299 21811046 ~ 21811619 (+) True G65834
TU88870 lncRNA downstream 42789 21815536 ~ 21818247 (+) True G65838
XM_022671519.1 mRNA upstream 55505 21715452 ~ 21716948 (+) True msgn1
XM_022671515.1 mRNA upstream 57016 21629787 ~ 21715437 (+) True gen1
XM_022671516.1 mRNA upstream 57016 21629787 ~ 21715437 (+) False gen1
XM_022671517.1 mRNA upstream 57016 21630040 ~ 21715437 (+) False gen1
XM_022671518.1 mRNA upstream 57016 21639559 ~ 21715437 (+) False gen1
XM_007241662.3 mRNA downstream 132512 21905259 ~ 21911577 (+) True tmem19
XM_022671525.1 mRNA downstream 160022 21932769 ~ 21956278 (+) False rab21
XM_007237355.3 mRNA downstream 160030 21932777 ~ 21956278 (+) True rab21
XM_007237357.3 mRNA downstream 221363 21994110 ~ 22100636 (+) True ptprr
XM_022671526.1 mRNA downstream 332093 22104840 ~ 22161850 (+) True LOC103042836
TU88777 other upstream 87619 21629862 ~ 21684834 (+) False gen1
TU88525 other upstream 747879 21024175 ~ 21024574 (+) True G65575
TU88511 other upstream 814818 20957135 ~ 20957635 (+) True G65565
XR_002650196.1 other upstream 1978174 19780663 ~ 19794279 (+) False LOC103037311
TU87956 other upstream 2431574 19280300 ~ 19340879 (+) True alyref
TU89211 other downstream 1166855 22939602 ~ 22949192 (+) False ccdc167
TU89229 other downstream 1226623 22999370 ~ 23003421 (+) True c7h11orf98
TU89299 other downstream 1358347 23131094 ~ 23137954 (+) False crebl2
TU89300 other downstream 1358347 23131094 ~ 23137954 (+) False crebl2
TU89467 other downstream 1671427 23444174 ~ 23444677 (+) True G66296

Expression Profile