RNA id: TU88866


Basic Information

Item Value
RNA id TU88866
length 486
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G65834
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21811046 ~ 21811619 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCATCTGAAATGTGTTCTCATTTCATACTGgactctgtgttttttaaatatatgcacAGACTTAAGAAGCGTAAGTCTCTCTATATTCTTTGGAGGTTCAGAtctacaataaaaacacaatacatttcACAATTATCTTCGCCAGCAAGCTGTAATGTGAAGGCCTACTGTCAGAATGTGAACTGTGTGACTCACACTTTTGCCAGAGTTAAGCCAAGTTCCTTTGCAGTCATTGAGGCAAAGAACTCATAACTGTCAAGAACAGCCTTATCGTGGCCTTTAACCAACACAGTAAGCTTCTGAAATAGTGTGTCTGGCTCCTCAATGACTGTGATCTAGAGAAAACAGCATGAGTGTAAGAGGTAGTTTCATGCAGCACAGAAATGCATACCAAATCATCGATGGttttgacatactaggtcattattttgagatagtatcttaaaatattaagatagcatctcaaaatagtgagacactaagtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88858 lncRNA upstream 3835 21806164 ~ 21807211 (+) True G65832
TU88857 lncRNA upstream 5001 21805312 ~ 21806045 (+) True G65831
TU88856 lncRNA upstream 20102 21790585 ~ 21790944 (+) True G65830
TU88853 lncRNA upstream 38299 21772453 ~ 21772747 (+) True G65827
TU88800 lncRNA upstream 101290 21705335 ~ 21709756 (+) True G65781
TU88870 lncRNA downstream 3917 21815536 ~ 21818247 (+) True G65838
TU88872 lncRNA downstream 8760 21820379 ~ 21820585 (+) True G65840
TU88911 lncRNA downstream 146707 21958326 ~ 21958687 (+) True G65875
TU88909 lncRNA downstream 147596 21959215 ~ 21962445 (+) True G65873
TU88910 lncRNA downstream 157890 21969509 ~ 21970077 (+) True G65874
XM_022671519.1 mRNA upstream 94098 21715452 ~ 21716948 (+) True msgn1
XM_022671515.1 mRNA upstream 95609 21629787 ~ 21715437 (+) True gen1
XM_007241662.3 mRNA downstream 93640 21905259 ~ 21911577 (+) True tmem19
XM_022671525.1 mRNA downstream 121150 21932769 ~ 21956278 (+) False rab21
XM_007237355.3 mRNA downstream 121158 21932777 ~ 21956278 (+) True rab21
XM_007237357.3 mRNA downstream 182491 21994110 ~ 22100636 (+) True ptprr
XM_022671526.1 mRNA downstream 293221 22104840 ~ 22161850 (+) True LOC103042836
TU88777 other upstream 126212 21629862 ~ 21684834 (+) False gen1
TU88525 other upstream 786472 21024175 ~ 21024574 (+) True G65575
TU88511 other upstream 853411 20957135 ~ 20957635 (+) True G65565
XR_002650196.1 other upstream 2016767 19780663 ~ 19794279 (+) False LOC103037311
TU87956 other upstream 2470167 19280300 ~ 19340879 (+) True alyref
TU89211 other downstream 1127983 22939602 ~ 22949192 (+) False ccdc167
TU89229 other downstream 1187751 22999370 ~ 23003421 (+) True c7h11orf98
TU89299 other downstream 1319475 23131094 ~ 23137954 (+) False crebl2
TU89300 other downstream 1319475 23131094 ~ 23137954 (+) False crebl2
TU89467 other downstream 1632555 23444174 ~ 23444677 (+) True G66296

Expression Profile