RNA id: TU88909


Basic Information

Item Value
RNA id TU88909
length 3231
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G65873
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21959215 ~ 21962445 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCGCCTCTGGCCAAAATCTGAAGCTGAACATGTGTTACTTTCCCTAAATAGAATTAATACACAGTGGCTGTGCTGACAgttatttaaatctattttagcCAGTGGAAAGATAAATGTtccttttgcttttttaaaacctttaagtTTATGAAGCAGTTGGGTCTGAGCACAAGCATGTTATGATGCTTAAGAGGGCATTTCATAAAGATCTTTCTGTATGTATACAcacccccaaatcccaaaaaacagacagaaaatgtACAGAAATGTACATATAAACAGAATGCAATGGTTTACAAATATTATggacacacatttacacacaatataACAGAACACATAAAGATGTTGAAATTGAGACAATTTGTCATTTCATAAAAAACCTAAAACCCGATGACAGCAACAAAAAAGGACACAGTTTGCTGGAGGAGAAATTTGTAAATAACTTACATGACTgggtataattttttttttttgagagataGAGTATGAAAAGCAAACTGCGAAGAAATGTGAAGAGTATTGGATGCTGGGGATGATGGTCATGCAGGGCATGATTCTGTTCTAGAAATCACTGTCTGTGAACACAATTCCCACTACAATCCACAAATGCAGGTTAAATTTGTGTTTTCTAAAGAACACCTGCTCCCTTCTCTGGGATACAACACATTTCAAATGGAAAACTGTTCTGTTGTCAGGTCAATCAAAACCTGAAATTCTTTTTTGGAATCCATGGACCAACCAGCTTATTACCAGAACATAGTTCAAAAGCATGCATCTCTGCGGAAGGGGTTGCATTAGTGCCTAGTGATCAGTATATAGAACATCTGCTCCCATGCAGACAACTTTCAGGGCCTTTAAGCAAGACAATGCTAACCCACATCCTGCATATTTCACAGACGAAAACATTTGGGCACATAATTAAATGAGAATCTGGCAAACAGACCCAGAACAAAATTGAAACAATATTCCTCCTCAAAAAATCCATCAAGAAGAAGGGATGCTACACAACAGTGTACTTGGTAGACATGACTTTTTTGAGATGTGTTGCTTCAATCAATTTTtcatgaaatggtaaaatgtctcattATTAAAGTGTTGGTGTTCTACTGtgaataaaatctgtttttatttacatttatttacatgttgTCCTTACaaatatgatatacagtatatcacaaaCGAGTACACCCCTcaaatgtttcttttatttataatatattttcatgggacaacacttaAGATGACACTTTGATATGGTGTAAAGCAGGGGTTACTAATAGGCGCACCGCGGTCCGGGTCCATACGAGatgttgtccaatgcggaccaaAACCGATAAATCTAATGAGAATGATTGAATTCtgacattgtttatttaaagcggcggaacgtGTGCGACAGAGAGAATGGGGAGAAATGTACACAAAATATTGCCAGAGAGggtgaaagaaggataataaagtatgcagagaaatagATAGAGGTCTGCAGTCtatatagaactacaaagtttcCTATATAATCATTGGAGTTGATTAAATGGATAATAGATGTAGAAACAAGTGGGGGGTCATAATGTCAtgcttcattgtttttttttttttttttgcatttgtattatttgaaaaGAAAATTTGATTGCGTTCTAGGAGTTTGAATATTTTCACAGCAGCTATCACTGTAGGAAAGTGTAAATGATTGTAACACGGACAATAACAGTTATGGATGAAAGGACGCTTTGTTGGAACTGTATTTTTTCTTGTGTCATTGTTTTGTAATAGAACTATTATAACACTTTGCCAGGTGTCAATGACATCTTTATTTAAGATTTGTGTGCAGCAGGTGAGTGACATGAGGTTTCATATTTATTGTACCAATGTGTTCTGTTGTCTTCATGTGGGAAAAAAGGAACTTATAATATCAATGCACTTCCCTAGTTTTAAGGTATGATGTGTAAGAAATTTGCAGGAAATTGTTATTTACATACAGAAAAGTTATTTGTCTTTGTAATGATTCTTGAGGCATTGCTTTATGAAATTGGAAATTGAACCATGTGTACAGGCAGTAGCTGTATAGTACCAAAGTAAGTGGAACCTCTTTGCTGTTATATAAAAAGTTGCAAAATGTCCCTTTAAGACTTAACATGTTCTGAATGATAAGTATACACTGACATTGGAAACTGTTAGCAAGAACAATACAACTACTTATTCATGCGTTTAATACACATCAAACTACGCTGAAAACAGCACAAGACCACATCAGGTTCCACATCTGAAggccaaaaacaaaaagcataCTTCCAAAACCATACCAACCAATCACCACGTTTATGCCATATCCTATTTCAGTATTGCATATGAGTTATagttaggcccaatcccatttcaccctttggccctaccacttaccccaaAATCCTCTTCCTAGGAATTGGGACAAACCTTCAAGAACTTGATATGTCATCAGGAGCGCTGAAGTTCAGTAATcttgctgctggttaactagttaactttagggaaTTGTAGGTCTTCAGAAAGCTgggagatggtgcagaaatgaataattattgTCCATTCATTAAGTCCTTTgggatggggagctgaaattagcttttattagcatgaattttatttttatttttccatttcaccttaaatgctcTCATATGCCACACCCTTTAGGGTGAAACaaaatagttagctagctagtgagacaaactactagtgatctttaagcttgttatgaagaattcgaCCATAAAACAGTGAAaccacacattaaactatggtttTTAGTGCTAATTGtcacaaggaaaatacttacatttgtgggcTTCATTTGCCTAaagcccaatttatacttctgcgtcaaaTCTACGTTGTGGCTTATGTGTCGCTGCATACCCTACGCGGTAGCCTATGTAAATTGGCGCAcagagttatgttttttttttcagtggacCCTTGGGATTAGTAGCATGGcctaaaaaatgcaaaaaatatacattctGTCTCTCTGGCTTTGACGTGAAGAAGTTCAGTTCAtctacataatttttttttactttgtgcaCCAAAATCAAGGAAAGCAGATATGTTTGAAGGTAACTGCCTGCAGACATGGAAGTCTTTAGAGGCGCTATATATCAAATCCATTAACATTCTAAAATGAGTTAACAAAGGAAAAGTTTAAAACACACTGTTTACTGCCAATCTGTCAAAACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88911 lncRNA upstream 528 21958326 ~ 21958687 (+) True G65875
TU88872 lncRNA upstream 138630 21820379 ~ 21820585 (+) True G65840
TU88870 lncRNA upstream 140968 21815536 ~ 21818247 (+) True G65838
TU88866 lncRNA upstream 147596 21811046 ~ 21811619 (+) True G65834
TU88858 lncRNA upstream 152004 21806164 ~ 21807211 (+) True G65832
TU88910 lncRNA downstream 7064 21969509 ~ 21970077 (+) True G65874
TU88918 lncRNA downstream 26800 21989245 ~ 21989543 (+) True G65882
TU88948 lncRNA downstream 129744 22092189 ~ 22092675 (+) True G65910
TU89044 lncRNA downstream 164944 22127389 ~ 22129328 (+) True G65993
TU89117 lncRNA downstream 315983 22278428 ~ 22278731 (+) True G66048
XM_022671525.1 mRNA upstream 2937 21932769 ~ 21956278 (+) False rab21
XM_007237355.3 mRNA upstream 2937 21932777 ~ 21956278 (+) True rab21
XM_007241662.3 mRNA upstream 47638 21905259 ~ 21911577 (+) True tmem19
XM_022671519.1 mRNA upstream 242267 21715452 ~ 21716948 (+) True msgn1
XM_022671518.1 mRNA upstream 243778 21639559 ~ 21715437 (+) False gen1
XM_007237357.3 mRNA downstream 31665 21994110 ~ 22100636 (+) True ptprr
XM_022671526.1 mRNA downstream 142395 22104840 ~ 22161850 (+) True LOC103042836
XM_007238167.3 mRNA downstream 218758 22181203 ~ 22243904 (+) True LOC103044887
XM_022671528.1 mRNA downstream 312196 22274641 ~ 22278022 (+) True dus4l
XM_007238165.3 mRNA downstream 312204 22274649 ~ 22278003 (+) False dus4l
TU88777 other upstream 274381 21629862 ~ 21684834 (+) False gen1
TU88525 other upstream 934641 21024175 ~ 21024574 (+) True G65575
TU88511 other upstream 1001580 20957135 ~ 20957635 (+) True G65565
XR_002650196.1 other upstream 2164936 19780663 ~ 19794279 (+) False LOC103037311
TU87956 other upstream 2618336 19280300 ~ 19340879 (+) True alyref
TU89211 other downstream 977157 22939602 ~ 22949192 (+) False ccdc167
TU89229 other downstream 1036925 22999370 ~ 23003421 (+) True c7h11orf98
TU89299 other downstream 1168649 23131094 ~ 23137954 (+) False crebl2
TU89300 other downstream 1168649 23131094 ~ 23137954 (+) False crebl2
TU89467 other downstream 1481729 23444174 ~ 23444677 (+) True G66296

Expression Profile