RNA id: TU88911


Basic Information

Item Value
RNA id TU88911
length 362
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G65875
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21958326 ~ 21958687 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tactgtggtcagatgagaccaaaattgaactttttggccaccAAGGAAAACGCTATGTCTGGCGCAAACCCAACACATCTCATCACCCCAAGAACACCATCCccacagtgaaacatggtggtggaagcattATGCTGTGGGGATGTTTTTCAGCAGTAGGGACTGGAAAACTGGTCCGAGTcgaggggaagatggatggtgctaAATACAGGGATATTCTAGAGCAAAACCTGTTTACGTCTGTCAGTGATTTGAGACTAGGCCGGAGATTTaccttccaacaggacaatgacccaaagcatacTGCTAAAGCAACACTTGAGTGGTTCAAGAGGAAACGTGTAAACATATTGGAATGGCCT

Function

GO: NA

KEGG:

id description
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88872 lncRNA upstream 137741 21820379 ~ 21820585 (+) True G65840
TU88870 lncRNA upstream 140079 21815536 ~ 21818247 (+) True G65838
TU88866 lncRNA upstream 146707 21811046 ~ 21811619 (+) True G65834
TU88858 lncRNA upstream 151115 21806164 ~ 21807211 (+) True G65832
TU88857 lncRNA upstream 152281 21805312 ~ 21806045 (+) True G65831
TU88909 lncRNA downstream 528 21959215 ~ 21962445 (+) True G65873
TU88910 lncRNA downstream 10822 21969509 ~ 21970077 (+) True G65874
TU88918 lncRNA downstream 30558 21989245 ~ 21989543 (+) True G65882
TU88948 lncRNA downstream 133502 22092189 ~ 22092675 (+) True G65910
TU89044 lncRNA downstream 168702 22127389 ~ 22129328 (+) True G65993
XM_022671525.1 mRNA upstream 2048 21932769 ~ 21956278 (+) False rab21
XM_007237355.3 mRNA upstream 2048 21932777 ~ 21956278 (+) True rab21
XM_007241662.3 mRNA upstream 46749 21905259 ~ 21911577 (+) True tmem19
XM_022671519.1 mRNA upstream 241378 21715452 ~ 21716948 (+) True msgn1
XM_022671515.1 mRNA upstream 242889 21629787 ~ 21715437 (+) True gen1
XM_007237357.3 mRNA downstream 35423 21994110 ~ 22100636 (+) True ptprr
XM_022671526.1 mRNA downstream 146153 22104840 ~ 22161850 (+) True LOC103042836
XM_007238167.3 mRNA downstream 222516 22181203 ~ 22243904 (+) True LOC103044887
XM_022671528.1 mRNA downstream 315954 22274641 ~ 22278022 (+) True dus4l
XM_007238165.3 mRNA downstream 315962 22274649 ~ 22278003 (+) False dus4l
TU88777 other upstream 273492 21629862 ~ 21684834 (+) False gen1
TU88525 other upstream 933752 21024175 ~ 21024574 (+) True G65575
TU88511 other upstream 1000691 20957135 ~ 20957635 (+) True G65565
XR_002650196.1 other upstream 2164047 19780663 ~ 19794279 (+) False LOC103037311
TU87956 other upstream 2617447 19280300 ~ 19340879 (+) True alyref
TU89211 other downstream 980915 22939602 ~ 22949192 (+) False ccdc167
TU89229 other downstream 1040683 22999370 ~ 23003421 (+) True c7h11orf98
TU89299 other downstream 1172407 23131094 ~ 23137954 (+) False crebl2
TU89300 other downstream 1172407 23131094 ~ 23137954 (+) False crebl2
TU89467 other downstream 1485487 23444174 ~ 23444677 (+) True G66296

Expression Profile